Tag Archives: meetings

Friday 04/05/13

Posted on April 5, 2013 by admin

9:00 A – 8:00 P, 9:00 P – 10:45 P General (8:00 A allergy test) STORM analysis Getting images of relative background levels in 3-Cy5 vs 405-cy5 Drift correction makes sparse images look horrible (even the rather long integration of … Continue reading →

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Friday 03/08/13

Posted on March 8, 2013 by admin

10 A – 11:00 P Transcription models Finished derivation from yesterday on multiple binding wrote up in Review, started extension to cooperativity Markov Chains in TeX write like chemical equations with mhchem package Use Tikz drawing package Named Graphs (Tikz … Continue reading →

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Monday 12/10/12

Posted on December 10, 2012 by admin

9:50 A -7:40P, 8:40P – 12:30 A yari lab meeting De-noising: use conventional image as low pass filter to remove non-blinking background Use conventional alignment for drift correction, translate all STORM movies to match multi-color conventional image. Use field of … Continue reading →

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Monday 11/26/12

Posted on November 26, 2012 by admin

9:35 A – 7:00P, 8:20P – 11:50P STORM chromewarp 3D has much more trouble vertically matching beads when we take the same field for each z.  Need to change this.    1 manual edit of the beadrun.xml file ought to … Continue reading →

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Friday 11/09/12

Posted on November 9, 2012 by admin

9:30 A – 8:30P Making double mutants Collect virgin TM2/TM6 flies Clear Pr/TM3,hbZ and Sp/CyOZ for virgin collection to remake double balanced 2,3 flies. TM6b = AntpHue1 . TM2 = Ubx130esemc2 . E(spl) and sim[D](7646) both have TM6b, Tb.  Should be lethal with TM6. … Continue reading →

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Wednesday 11/06/12

Posted on November 7, 2012 by admin

9:45 A – 8:30 P write to ML about bistability write to Bender about Hox model.  — apparently email contact is not recommended.  Try phone tomorrow. write summary of Francis suggestions remove medium from S2 cells, add fresh medium.  Reduce … Continue reading →

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Protected: Francis Lab Meeting feedback

Posted on November 7, 2012 by admin

There is no excerpt because this is a protected post.

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Wednesday 10/10/12

Posted on October 10, 2012 by admin

10:00 A – 8:00P, 9:00P – 11:15P Collect virgins Working on presentation for meeting with Xiaowei (see notes below on data processing and analysis). Meeting with XZ.  Notes here. Processing STORM data 8/25/12 AbdA, no 750 movies analyzed yet in … Continue reading →

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Monday 09/17/12

Posted on September 17, 2012 by admin

9:30 AM – 7:30PM, 9:00P – 11:00P Start Unsupervised_Dotfinding for mRNA counting of sog data. Troubleshooting error with list2img for movie2vectorSTORM: not outputting Gaussian image Getting GPU gaussian blobs script to work — test script works great Lab meeting (Shu: … Continue reading →

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Monday 04/16/12

Posted on April 16, 2012 by admin

9:50 A – 12:20 A Lab meeting Yari Lab discussion on STORM scopes: should be used all night, should upgrade STORM3 so more users can do their experiments — need 488 line and 647 line. Wenqin’s Thesis defense Journal club … Continue reading →

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