Tag Archives: project2

Tuesday 01/14/14

Posted on January 14, 2014 by admin

9:45a – 12:15a Goals Today Rewrite ColorIntervalJumpGap.m Function to allow different gaps for different chromatin types. Select new Red regions Chromatin Project analysis Designing some new regions: notes Writing up summary of chromatin regions thus far: see protected notes. Let’s … Continue reading →

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Tuesday 01/07/14

Posted on January 7, 2014 by admin

10:00a – 10:15p chromatin data collection Finish O/N STORM on F04. Transfer data from F03 and F04 to Monet start analysis of F03 and F04 data wash out stains for new BX-C regions: F05, G04 (ANTC), F03-F04-F05 combo, F05-A647 F06-A750. … Continue reading →

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Wednesday 12/18/13

Posted on December 18, 2013 by admin

10:30a – 8:15p, 12:00p- 1:00a Meeting with XZ prepping slides (see notes) Test probes synthesis analyze tomorrow Coding matlab-storm Work with Jeff to restructure startup / installation need to update readme need to update all global variables to new conventions … Continue reading →

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Friday 12/13/13

Posted on December 13, 2013 by admin

10:45a – 12:15a Notebook backed up notebook updated wordpress Z-calibration cross correlation doesn’t improve curve alignment visibly — curves are fundamentally a bit different no spatial structure evident Ph Project reviewing simulation results saved as simulationName_2.eps to file Test new … Continue reading →

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Wednesday 12/04/13

Posted on December 4, 2013 by admin

9:40a – 11:30p Goals show Hao new project 2 results RNase-Away / bleach treat everything on my bench fix and stain new RNA cells. Allow 1 hour prehybe. Project 2 See notes Chromatin colors, double stain prep Probe organization reorganized … Continue reading →

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Protected: Thursday 11/28/13

Posted on November 29, 2013 by admin

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Protected: project2

Posted on November 15, 2013 by admin

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Thursday 11/14/13

Posted on November 14, 2013 by admin

9:30a – 11:45p Coding / Genomics Fixing fastaread to avoid memory errors Matlab calls char on the list of sequences. If there are short sequences and very long sequences mixed together in the fasta file, this can introduce many gigabytes … Continue reading →

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Protected: project 2 update

Posted on November 10, 2013 by admin

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