To Do

Ph project

• analyze gene expression data by chromatin region
  • write code to grab all genes mapping to blue regions
  • take all blue intervals (already recorded), get gene by interval (function already built), let run.
  • the gene matching game! hopefully one of my lists has this covered, otherwise this is going to be a pain as always to match Ajaz’s common names to my common names / gene IDs.
• Make figures from Confocal data
  • Made preliminary figure from Ph-data (Completed 02/09/14)
  • bodies not highly pronounced. Ajaz gives it the thumbs down
  • Sign-up for more confocal time. Try to image freshly stained S2 cells.
• make supplemental figure from negative controls
  • no primary
  • Flag in S2

Team project

• downsample bead data
• analyze lib4 data

Sequencing

• prep samples for qPCR (Completed 02/10/14, 11:45pm)
• Run qPCR (completed 02/11/14)
• Analyze qPCR data (wrote new script). (Completed 02/11/14)
• Set up and run MiSeq (Completed 02/11/14)