Tuesday 03/18/14

9:30a – 6:30p, 11:00p – 1:00a

Oligo Secondaries

  • work out new strategy for figure
  • need simulations of binding density

Chromatin Polymer simulations

Goal: illustrate effect of localization counts
* wrote new basic StickyPolymer simulation function
* wrote some new polymer plotting functions
* wrote a basic (stub) binding chemistry function
* all new PolymerSim package is in matlab-functions

Figure layout

  • working on figure presentation
  • see protected notes

Project 2

Ph Project

  • drop off still a little too shallow (previously this was always too steep).
  • effect on chromatin structure was more obvious with lower bond energy (higher breaking probability).
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