March 2023 M T W T F S S « Aug 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 Categories
- AP patterning (13)
- Blog (1)
- Chromatin (88)
- Conference Notes (72)
- Fly Work (54)
- General STORM (25)
- Genomics (134)
- Journal Club (22)
- Lab Meeting (66)
- Microscopy (79)
- Notes (1)
- probe and plasmid building (58)
- Project Meeting (3)
- Protocols (13)
- Research Planning (74)
- Seminars (21)
- Shadow Enhancers (59)
- snail patterning (40)
- Software Development (5)
- Summaries (1,412)
- Teaching (9)
- Transcription Modeling (40)
- Uncategorized (10)
- Web development (19)
Links
Tags
analysis cell culture cell labeling chromatin cloning coding communication confocal data analysis embryo collection embryo labeling figures fly work genomics hb image analysis image processing images in situs Library2 literature making antibodies matlab-storm meetings modeling MP12 mRNA counting Ph planning presentation probe making project 2 project2 result results sectioning section staining shadow enhancers sna snail staining STORM STORM analysis troubleshooting writing-
GitHub Projects
Tag Archives: reading
Tuesday 07/08/14
10:00 am – 8:00 pm, 11:00 pm – 11:50 pm Sequential staining F06 at least stains this time, some spots quite clear. However staining not very good and STORM pretty weak. Tried flowing more secondary for an extra 2 hours … Continue reading
Sunday 10/21/12
11:00 A-3:00P, 7:00P – 9:40 PM upgrade linux laptop to 12.10 Review writing reading /re-reading recent literature White/Barolo/Cohen paper He / Sinha model see post Experiments Rinse out probes from DNA FISH (probes saved – green box) Rinse out probes … Continue reading
Posted in Summaries
Tagged embryo collection, embryo labeling, reading, writing
Comments Off on Sunday 10/21/12
Monday 07/23/12
5:00P – 12:00 A Recomputing polyermase density for snail looking for twinned spots. Reasonably common. Half of cc13 embryo collection imaged is probably clean through replication of sna locus. No G phases in early division (O’Farell 1994). cc14 is the … Continue reading
Monday 06/18/12
working on snail bistability manuscript Comparison of snail patterning to optimal decision making theory for two alternative forced choice (see Holmes et al), see post.
Saturday 05/12/12
11:30 A – 5:30P Finish DR acceptance statement / bio etc. Literature review: Shandilya transcription review, evidence for transcription factories: Xu 2008 (minichromosomes), Osborne 2004 (DNA / RNA FISH comparison) working on 3D vector bead alignment code