About my notebook.

This is my lab notebook.  It is how I organize and document my scientific research on a day-to-day basis.  It is intended primarily for my personal use as a permenant record of my work.

Unlike traditional notebooks, it is text searchable.  All notes are listed in appropriate categories, and I can easily rearrange my notebook to display only posts relating to a particular category.  Research images, from gel photos to simulation results to draft figures for manuscripts are included as images, and automatically become part of a date-tagged browsable image collection.  Hyperlinks let me connect protocols and references.

My notebook also automatically tracks my code development, through RSS feed forwarded by my code repository in Github.  The notebook additionally keeps track of what I’m reading, through RSS feed run through Mendeley.

In addition to being more convenient, I hope this notebook contributes in a small way to making Science more Open.  Much of what we do as academic researchers is never published, and these findings (though funded generally by tax payer dollars) are forever lost to the world.  Much of what is published is only available in expensive, specialized journals which most of the world does not have access to.  It is my hope, and that of the Open Science Movement, that the technologies of Web2.0 enable us to move to a world where this is no longer the case.  In an open or partially open web hosted notebook, all the unpublished ideas and discoveries can still be easily released to the world, where they are text-searchable and easily discoverable, so that other researchers can benefit from them.

Unpublished information that I am not yet ready to share with the world at large is protected by passwords.  These can be shared with individual collaborators of mine, and removed once the relevant work is published.

I have received much inspiration, encouragement, and technical support from several individuals.  Most importantly, my brother Carl Boettiger, who is a leading figure in the Open Science Movement at Davis, and keeps a completely Open Notebook here.

2 Responses to About

  1. Michele says:

    i especially like the comment about much of our research ending up unpublished and thus going to waste. Maybe you should have a section called: negative results or experiments that didn’t work, or unreproducible results. Knowing what doesn’t work is almost as important as knowing what does.

    one question/concern:
    journals require that images/data not be previously published. so it seems that publishing draft figures here may be risky business.


  2. Guillaume says:

    Great idea, I didn’t knew about this Open Science Movement. I m testing different STORM imaging buffer right now and I came upon by luck on your website/lab notebook. It saves me a lot of time. Thanks for sharing !
    I have definitely to start doing a website lookalike, but first I have to convince my boss…

    Keep on publishing !


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