Tag Archives: matlab-storm

Thursday 01/23/14

Posted on January 23, 2014 by admin

9:45a – 12:15a STORM analysis analyze bead data for BXC double stains analyze bead data for PhM Psc Finish O/N run of G05 quick look at ANTC data (just image based drift correction available at present) fewer localizations despite bright … Continue reading →

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Saturday 01/18/2014

Posted on January 18, 2014 by admin

10:30a – 7:20p, matlab-storm STORMrender online Getting Jeff set up with STORMrender debugging: STORMfinder added paths in initialization, allowing matlab-storm to access depreciated versions of code in folders that weren’t supposed to be on filepath Features to add to STORMrender … Continue reading →

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Sunday 01/05/2014

Posted on January 5, 2014 by admin

10:30a – 8:00p, 10:00p-11:50p literature continue reading Berlivet et al PLoS Genetics on HoxA ID 19 candidate enhancers by ChIP and 5C 8 of 10 tested LacZ transgenics show limb bud enhancer activity TAD contacts in silent tissue Shh signalling … Continue reading →

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Saturday 01/04/13

Posted on January 4, 2014 by admin

10:00a – 11:55p (sailing canceled do to malfunction of committee boats) coding matlab-storm RunDotFinder “skip existing” option on DaoSTORM I believe is interpreted as resume and in insightM as actually skip. This should be double checked and made clearer. Maybe … Continue reading →

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Friday 01/03/2014

Posted on January 3, 2014 by admin

remotely 10:30a – 11:30a (snowstorm) Winterize bike: 11:30a – 2:00p lab: 2:00p – 9:00p Goals switch road tires for mountains for better stability in the snow Design new primer collection for chromatin library 3. Pick more regions for multi-color experiments: … Continue reading →

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matlab-storm restructure

Posted on January 2, 2014 by admin

To do Push current individual branches to distinct user specific remotes (on user specific remote accounts). Reconfigure remotes on local repository so both the release and the development are present. This is a single repository on the local computer and … Continue reading →

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Wednesday, 01/01/2014

Posted on January 1, 2014 by admin

1:30p – 9:10p, remotely, 12:30a – 1:15a Goals more Ph imaging Wt New Year’s letter website updates Troubleshooting drift correction curves. start working on dual-color ChromatinCropper STORM for Ph project The buffer has all gone, because I ran the thing … Continue reading →

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Tuesday 12/31/13

Posted on December 31, 2013 by admin

9:00a – 5:00p Goals set up STORM imaging for PhWtPh. improved drift correction write quick script to average bead dax movies (and split them out?). Test on the G1-G1 0004 data? modify feducialDriftCorrection function to be able to handle time … Continue reading →

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Monday 12/30/13

Posted on December 30, 2013 by admin

9:20a -7:00p Goals Analyze 2-color STORM data test out new image-writers for hal Getting started Monet windows explorer froze and got killed. Requires restart. Finish up notes from yesterday, add gel images to notebook. STORM attempted software update to do … Continue reading →

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Saturday 12/28/13

Posted on December 28, 2013 by admin

9:30a – 1:45a Library 3 Design / probe building Results from first attempt at probe assembly oligoArrayCommand was getting rewritten in the loop, need a temp parameter to preserve the genename flag to be used for substitution consequently probe building … Continue reading →

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