Category Archives: Research Planning

Levine Progress Reports, planned experiments, research summary

Protected: thoughts on improving my chalk talk

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Protected: Project planning 12/04/15

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Protected: new project planning

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PcG perturbation experiment planning

RNAi Cavalli lab (Gonzalez et al) do RNAi based visual screen of RNAi knockdown, look at Pc. distributions of Pc fluorescence across cells in Pc knockdown is pretty tight — the remaining variability could be background auto-fluorescence. This looks promising. … Continue reading

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Protected: research planning, multiplex 5C

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Protected: project 2, planning

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Rethinking Project Organization

How do you organize your research projects? For the last three years or so, I have adopted a project organization structure along the lines recommended by William Noble in PLoS CB: A Quick Guide to Organizing Computational Biology Projects. The … Continue reading

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organizing research documentation

My Current Scheme: Research Papers downloaded PDFs, a Mendeley ‘watched folder’ Paperwork list of suppliers, order forms for equipment, reimbursement forms, applications for grants / fellowships etc Protocols a github hosted repo of Markdown files Presentations conference talks / advisor … Continue reading

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Goals 02/10/14

To Do Ph project analyze gene expression data by chromatin region write code to grab all genes mapping to blue regions take all blue intervals (already recorded), get gene by interval (function already built), let run. the gene matching game! … Continue reading

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Protected: Drosophila Transcription Projects

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