Author Archives: admin

Saturday 09/20/14

12:00 pm – 11:30 pm multi-color epigenetic/structural boundaries finalizing implementation / tests of the Bogdan’s Christofides TS algorithm for matlab fixed some memory allocation issues, installed MinGW windows compiler in software to compile c code. Runs nicely. (Matlab may require … Continue reading

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Friday 09/19/14

10:00 am – 8:00 pm Exploring new metric: inspired by the dilate balls around each localization fast / robust approach: 3D distance threshold to other points (threshold pdist matrix) compute fraction of points from each channel colocalized with other channel … Continue reading

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Wednesday 09/17/14

9:30 am – 10:30 pm 9:30-11:00 select some multicolor regions for a training set, send to BB commenting on over interpretation of data in paper highlighted in the Crimson. project 2 see notes draft google presentation summary of results, share … Continue reading

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Protected: project 2: analysis 09/17/14

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Tuesday 09/16/14

9:30 am – 1:00 am AO demo 9:30am – 12:00pm demo instruction with Rep AO needs firewire connection to computer 2, can’t talk to the STORM3 computer take calibration first with beads 5:00pm – 6:00pm trying out sample figure making … Continue reading

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Monday 09/15/14

9:30 am — 4:50 pm, 9:30 pm – 1:15 am Meetings lab meeting 10-12:15 pm, see notes journal club 12:15 – 1:00 pm see notes project 2 team meeting, 3:00 pm ? – ? project 2 to do see notes. … Continue reading

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journal club 09/15/14

Guisheng: Nature, Auditory corollary discharge background different cortical regions interact strongly (e.g. motor cortex talks to other cortexes) this is called “corollary discharge”. Observations auditory cortical excitatory connections are suppressed during movement. apparent anticiaption of movement? — supression starts before … Continue reading

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Protected: lab meeting 09/15/14

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Sunday 09/14/14

10:00 am – 11:59 pm STORM New Dave screwed up the sequence of events – moves before changing parameters This has destroyed all my conventional images during STORM, and seriously bleached my dyes. — 750 region gets blasted with max … Continue reading

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Protected: project 2 update: 09/14/14

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