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Journal Club: imaging through scattering media

Presented by George Recent Nature photonics paper on scattering. Imaging deep with a scattering medium … : http://www.nature.com/nphoton/journal/vaop/ncurrent/abs/nphoton.2015.24.html Intro: scattering just want photons that hit target and bounce back, not the ones that scatter of tissue. Also don’t want to … Continue reading

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Protected: Lab Meeting 05/29/15

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Thursday 05/28/15

9:30 am – 9:45 pm Manuscript Revisions Discussions with Jeff and Bogdan move pairing discussion to end of volume scaling paragraph. (now addressed in version 8-5). show only volume not rg in extended data on higher order effects (BB will … Continue reading

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Wednesday 05/27/15

9:30 am – 12:35 am Organizing agree to review for JTB (will do next week after submission) troubleshooting STORMfinder on Mac Analyzing cell-to-cell variation Identifying split loci Revising manuscript new figures: pairing analysis cell-cell variation higher order effects revised main … Continue reading

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Tuesday 05/26/15

8:30 am – 12:30 am Revising chromatin manuscript. Figures all on version 10 revised all figures as discussed except new E8 embedded all figures in 8-2 main text on version 8-2. To do tomorrow finish responding to XZ comments in … Continue reading

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Monday 05/25/15

10:00 am – 5:10 pm, 8:00 pm – 11:45 pm Parallelizing image analysis issues with parfor loops much faster easily exploading memory observation: launch and shutdown of parpool is not fast — takes several minutes even to spin down. Found … Continue reading

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Friday 05/22/15

8:00 am – 5:00 pm, 8:00 pm – 9:45 pm Goals revise domain names to match new conventions write 100 word summary for paper. Meetings lab meeting discuss microscopes group C presentations microscope decisions buy new Andor 897 ultra for … Continue reading

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Thursday 05/21/15

11:00 am – 12:00 am (9am-11am lab volleyball practice) Chromatin paper discuss revisions with Xiaowei working on critical revisions prior to sending to collaborators sent draft to CW and LM and team MERFISH update planning meeting with XZ discussion with … Continue reading

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Wednesday 05/20/15

9:00 am – 9:50 pm MERFISH Playing with deconvolution of Laplacian processing see notes summary: very promising in speed, accuracy, simplicity, and aesthetics. ran new pipeline on 141004 data (saved in folder 150520) rerunning with more stringent selection against background … Continue reading

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Protected: MERFISH image processing 05/20/15

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