Author Archives: admin

Protected: project 2 update: 10/22/14

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Wednesday 10/22/14

10:00 am – 9:00 pm, remotely 10:00 pm – 1:00 am Project 2 see post quick update team meeting XZ team meeting Chromatin Project working on manuscript text Hi-C simulations do we see TAD like structure in black chromatin simulations?

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Tuesday 10/20/14

9:30 am -5:50 pm, 7:30 pm – 12:00 am chromatin simulations check simulation project Odyssey results Now black behaves properly but yellow and blue are giving issues yellow not equilibrating? not sure what’s going on with blue, will require further … Continue reading

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Protected: project 2 update: 10/20/14

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journal club

Multiplex single-molecule interaction profiling of DNA-barcoded proteins Nature 2014, Church lab, Gu et al presented by Pallav Intro current approaches = protein vs. library rather do an everyobdy to everybody screen. One pot analysis not well-based screen Method single-molecular interaction … Continue reading

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Monday 10/20/14

10:00 am – 2:30 pm, 4:00 pm – 11:00 pm Meetings lab meeting (see notes) journal club (see notes) discussion with XZ Project 2 working on pipeline3

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Protected: lab meeting 10/20/14

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Sunday 10/19/14

10:30 am – 6:20 pm, 10:30 pm – 12:00 am Chromatin simulations Anaconda called from sbatch actually worked to get save data. issues with current simulations black chromatin starts at .4 (and stays there). writing new template to do the … Continue reading

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Protected: project 2 update: 10/18/14. On threshold scanning

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Saturday 10/18/14

10:00 am – 1:00 pm, 7:00pm – 9:00pm, Fly work flip stocks Simulations troubleshooting running polymer simulations on Odyssey GPU issues using polymer load and save commands — requires joblib testing out with Anaconda via sbatch command

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