Tag Archives: chromatin

Monday 07/14/14

Posted on July 14, 2014 by admin

10:00 am – 10:55 pm STORM imaging D11 Chromatin Project New stains L3E06 L3E07 L3E07toE09 L2 F03toF04 L2 G02toG04 New stains F3toF5 P1 + F6-P3, 2 large coverslips Chromatin overlap data rendering Models to compare Components of a random walk … Continue reading →

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Wednesday 07/09/14

Posted on July 9, 2014 by admin

9:30 am – 11:30 pm To do (Oligo Secondaries) review new fig 2 layout for Brian send additional images of spots for Fig 14 for Brian Sequential staining validated that toe-hold probes do work, competitive probes do not work, (for … Continue reading →

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Thursday 06/26/14

Posted on June 26, 2014 by admin

9:45 am – 1:30 am Chromatin Modeling continued Checking my simulation results from the polymer models I was running last night. Simulation Results BBv1 no attractive potential does give expected scaling: Adding an attractive potential does increase clustering. Has more … Continue reading →

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Thursday 06/19/14

Posted on June 19, 2014 by admin

10:00 am – 8:15 pm Working on Python OpenMM simulations goal, attempt to execute some of Mirny’s example code. Attempting to run demos e.g. scaffoldExample.py complains about notfinding joblib. installed this, required instlaling this complains about not finding mirnylib, which … Continue reading →

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Tuesday 06/17/14

Posted on June 17, 2014 by admin

10:00 am – 5:00 pm, 7:00 pm – 11:40 pm Literature interesting article on FACs smFISH sequencing from vanO group. interesting article on noise models for single cell sequencing from vanO group as well STORM D01 finished smoothly setting up … Continue reading →

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Protected: Conference Update: Bryan

Posted on June 16, 2014 by admin

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Tuesday 04/29/14

Posted on April 29, 2014 by admin

9:30a – 10:00p Computer Cajal troubleshooting computer behaving very sluggish today, denying connections restarted Cajal. also removed all the memory DIMMs and reinstalled them. Cajal now recognizes 48 GB of RAM again (instead of just 24 GB). Project 2 moved … Continue reading →

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Wednesday 04/23/14

Posted on April 23, 2014 by admin

8:30a – 10:45p Career planning from Jeff: K99 next application deadline is June 12th. After that it’s October 12th (see NLM page, NIGMS not as clearly laid out). recommended to apply with time to submit resubmission ~8 months after original … Continue reading →

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Monday 04/14/14

Posted on April 14, 2014 by admin

9:45a – 9:00p Computer issues Attempted to swap memory into Cajal. Cajal won’t boot up with any of the memory restored Tuck to 6x 8GB DIMMS. Cajal has 12x 4GB DIMMS wrote to IT to help get system back up. … Continue reading →

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Saturday 04/12/14

Posted on April 12, 2014 by admin

9:30a – 4:00p Computer Management attempting to give users rights to share their hard-drives on the network without having full Admin capabilities to do anything they want. Tried adding my ‘User’ account to these groups “Performance Monitor Users” — can … Continue reading →

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