Category Archives: Transcription Modeling

Protected: hb variability figs

Posted on June 16, 2011 by admin

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Protected: shadow modeling

Posted on May 15, 2011 by admin

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Protected: enhancer gradient analysis (hb + sna)

Posted on March 29, 2011 by admin

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Transcription modeling

Posted on March 27, 2011 by admin

Some thoughts on simple transcription models. Best case: noise is Poisson — limited only by the arrival of a single rate limiting component.  This allows for only linear control: doubling activator doubles arrival rate of transcription machinery. Adding opening and … Continue reading →

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Protected: Transcription kinetics

Posted on March 23, 2011 by admin

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Analyzing effect of increasing Gal4

Posted on March 15, 2011 by admin

Images with high variability have high overall average expression rate in MGa2x, images with more uniform expression have lower levels.  The reverse is true for MGa1x. MGa1x          

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Protected: Comparing tiling data to counting data

Posted on February 12, 2011 by admin

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Transcription discussions

Posted on January 27, 2011 by admin

Notes on Transcription modeling: need to be careful with discrete nature of Poisson cdf — incomplete gamma functions are not discrete, can’t throw away the floor function.  So you do need to wait at least until you have 1 bcd … Continue reading →

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Protected: hb-enhancer modeling cont pt2

Posted on January 19, 2011 by admin

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Protected: hb enhancer modeling cont…

Posted on January 19, 2011 by admin

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