Monthly Archives: October 2014

Protected: project 2 update: 10/22/14

Posted on October 22, 2014 by admin

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Wednesday 10/22/14

Posted on October 22, 2014 by admin

10:00 am – 9:00 pm, remotely 10:00 pm – 1:00 am Project 2 see post quick update team meeting XZ team meeting Chromatin Project working on manuscript text Hi-C simulations do we see TAD like structure in black chromatin simulations?

Posted in Summaries | Comments Off on Wednesday 10/22/14

Tuesday 10/20/14

Posted on October 21, 2014 by admin

9:30 am -5:50 pm, 7:30 pm – 12:00 am chromatin simulations check simulation project Odyssey results Now black behaves properly but yellow and blue are giving issues yellow not equilibrating? not sure what’s going on with blue, will require further … Continue reading →

Posted in Summaries | Comments Off on Tuesday 10/20/14

Protected: project 2 update: 10/20/14

Posted on October 21, 2014 by admin

There is no excerpt because this is a protected post.

Posted in Genomics | Comments Off on Protected: project 2 update: 10/20/14

journal club

Posted on October 20, 2014 by admin

Multiplex single-molecule interaction profiling of DNA-barcoded proteins Nature 2014, Church lab, Gu et al presented by Pallav Intro current approaches = protein vs. library rather do an everyobdy to everybody screen. One pot analysis not well-based screen Method single-molecular interaction … Continue reading →

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Monday 10/20/14

Posted on October 20, 2014 by admin

10:00 am – 2:30 pm, 4:00 pm – 11:00 pm Meetings lab meeting (see notes) journal club (see notes) discussion with XZ Project 2 working on pipeline3

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Protected: lab meeting 10/20/14

Posted on October 20, 2014 by admin

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Sunday 10/19/14

Posted on October 19, 2014 by admin

10:30 am – 6:20 pm, 10:30 pm – 12:00 am Chromatin simulations Anaconda called from sbatch actually worked to get save data. issues with current simulations black chromatin starts at .4 (and stays there). writing new template to do the … Continue reading →

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Protected: project 2 update: 10/18/14. On threshold scanning

Posted on October 19, 2014 by admin

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Saturday 10/18/14

Posted on October 18, 2014 by admin

10:00 am – 1:00 pm, 7:00pm – 9:00pm, Fly work flip stocks Simulations troubleshooting running polymer simulations on Odyssey GPU issues using polymer load and save commands — requires joblib testing out with Anaconda via sbatch command

Posted in Summaries | Comments Off on Saturday 10/18/14