Author Archives: admin

Protected: project 2 update: 10/20/14

Posted on October 21, 2014 by admin

There is no excerpt because this is a protected post.

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journal club

Posted on October 20, 2014 by admin

Multiplex single-molecule interaction profiling of DNA-barcoded proteins Nature 2014, Church lab, Gu et al presented by Pallav Intro current approaches = protein vs. library rather do an everyobdy to everybody screen. One pot analysis not well-based screen Method single-molecular interaction … Continue reading →

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Monday 10/20/14

Posted on October 20, 2014 by admin

10:00 am – 2:30 pm, 4:00 pm – 11:00 pm Meetings lab meeting (see notes) journal club (see notes) discussion with XZ Project 2 working on pipeline3

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Protected: lab meeting 10/20/14

Posted on October 20, 2014 by admin

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Sunday 10/19/14

Posted on October 19, 2014 by admin

10:30 am – 6:20 pm, 10:30 pm – 12:00 am Chromatin simulations Anaconda called from sbatch actually worked to get save data. issues with current simulations black chromatin starts at .4 (and stays there). writing new template to do the … Continue reading →

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Protected: project 2 update: 10/18/14. On threshold scanning

Posted on October 19, 2014 by admin

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Saturday 10/18/14

Posted on October 18, 2014 by admin

10:00 am – 1:00 pm, 7:00pm – 9:00pm, Fly work flip stocks Simulations troubleshooting running polymer simulations on Odyssey GPU issues using polymer load and save commands — requires joblib testing out with Anaconda via sbatch command

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Friday 10/17/14

Posted on October 17, 2014 by admin

10:00 am – 11:00 pm Project 2 see post Chromatin project working on manuscript playing with chromatin simulations

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Thursday 10/16/14

Posted on October 17, 2014 by admin

10:00 am – 12:45 am Chromatin Modeling initalization compressed random walk polymer maybe not best initial fractal globule state try using a sticky polymer, these have pretty good fractal structure all the way down. too sticky polymer settles down too … Continue reading →

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Wednesday 10/15/14

Posted on October 16, 2014 by admin

Chromatin Model revisions Add sticky and non-sticky blue (so not all nodes are sticky) helps blue mixing updates to chromatin model working on Polymer simulations

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