Category Archives: Summaries

Daily work summaries

Protected: Wednesday, 01/06/16

Posted on January 6, 2016 by admin

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Protected: Tuesday 01/05/16

Posted on January 5, 2016 by admin

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Protected: Monday 01/04/16

Posted on January 4, 2016 by admin

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Wednesday 12/09/15

Posted on December 9, 2015 by admin

9:30 am – 8:30 pm to do edit page-proofs for PcG clustering paper literature review travel reimbursement paperwork for last interview new library designs (started) flip fly stocks (not done) discussion with XZ on collaborations Literature Prescott and Wysocka paper … Continue reading →

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Wednesday 11/18/15

Posted on November 18, 2015 by admin

10:30 am – 7:00 pm Tasks formatting figures for Ph Polymerization paper. sent final version of figures to team. discussion with XZ about proposal. Phone interview (3pm -3:30pm) discuss model fitting with GF, reply to team with conclusions. Recently complete … Continue reading →

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Tuesday 11/10/15

Posted on November 10, 2015 by admin

10:00 am Tasks Manuscript Revise response to reviewer 1 Figure updates change blue color fix symbols discussed changes with XZ again Fastq files run 1: 150902_NS500422_0189_AHHNKFBGXX Illumina HiSeq 2500, 100 bp single read, rapid flowcell run 2: 151030_SN343_0533_AC8CW1ACXX Illumina HiSeq … Continue reading →

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Monday 11/09/15

Posted on November 9, 2015 by admin

12:30 pm – 11:30 pm (HHS appointment in morning for crushed foot). Making RNA probes through old method as a control for RNA staining quality found sna and hb probe templates hb tube is empty, attempted to dissolve DNA from … Continue reading →

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Friday 11/06/15

Posted on November 6, 2015 by admin

(Wed and Thur in NYC for Dale Frey interview) 9:30 am – 7:00 pm sequencing data processing bowtie finished running on all the datasets (20) Need to run cufflinks. first need to sort sam data using sam tools (should have … Continue reading →

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Tuesday 11/03/15

Posted on November 3, 2015 by admin

9:00 am – 7:30 pm Library building code fixed bugs in library design — can’t call TRDesigner with parallel pool with large off-target libraries. it takes a ton of time and a ton of memory to replicate these large OTTables … Continue reading →

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Monday 11/02/15

Posted on November 2, 2015 by admin

9:15 am – 6:00pm, 8:00pm – 8:55 pm Library building goal: building 10 kb tiling regions of BX-C probes against genome approach: adapt new OligoArray-free pipeline from transcriptome libraries to design genome libraries Problems crashed Morgan when all 256 GB … Continue reading →

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