9:30 am – 5:00 pm, 11:00 pm – 11:50 pm
polymer simulations
- reply from Max on Polymer modeling
- AnalyzeKnot returns Alexander polynomial number. This is 1 for an unknotted linear chain (0 for a unknotted loop. Knots are really only for loops)
- grosbergforce in Max’s simulations remains unknotted for 10^10 steps
- Analyzing my knot data in greater detail — writing python script to run AnalyzeKnot on all output data.
- see RunKnotAnalysis_140825
Data analysis
- processing L4E1 data with CC
- processing L4E2 data with CC
- need to start graphing data against non-internal regions, get first impression of the scaling differences here.
New stains
- L4E6, L4E7 and L4E6 + L4E7 Failed.
- Stained with S1, these are S2 probes! – (why not to do experiments after midnight on Sunday)
- restain L4E6, L4E7 and L4E6+7 with S2. (2.5 uL probe each + .5 uL 100 uM S2).
Meetings
- lab meeting: postdoc candidate interview (10:00am – 11:30am) (see post)
- fixing up slides for postdoc chat (updating figures etc)
- post-doc chat + dinner (after sailing)