Thursday 10/23/14

10:00 am – 11:00 pm

Chromatin Project

  • prep slides for meeting with LM et al this evening

Simulations

  • running more progressive condensation BLUE simulations
  • these work better than starting all sticky for the purposes of getting mixing.

PartlyStickyBlueGlobule2 BluePolymerInternalLinScale

BluePolymerInternalLogScale PartlyStickyBlueGlobule

Code development

  • update matlab-storm STORMfinder tutorial

Meetings & Seminars

  • postdoc seminar at 4:00 pm
  • discussion with ML and team: 5:30pm – 8:00pm
  • follow up discussion with BB: 8 – 9pm.

Notes from discussion with ML

  • should compute gyration tensors — radii of gyration along each principle component
  • try computing pairwise distance distributions for all points
  • would like theoretical framework for .2 scaling
  • need to demonstrate entire range (show transitions from .5 at small scales to .33 at large scales)

project 2:

  • see notes
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