Monday 03/16/15

9:00 am – 11:30 pm

Chromatin Analysis

  • re-analyzed C02 data (originally taken on STORM1, not the best data, background separation a bit difficult).
  • looking an Kc CNV
    • this genome is a bit of a mess (not sure how much noise is in this data either), but spot checking regions none seem especially or broadly out of average. Bxd is apparently over-replicated.
    • tried to compare to clone8, but the modEncode link is broken

KcCNV

Exploring metrics

File names explain metrics (click to see). See also y-axis label

CVofLocalDensity

NormSurfaceAreaVsNormPerimeter

PerimeterToAreaRatio

medianFracLocInRg

asphericity

rgOverV

To do

  • CoV of pdist matrix
  • this looks promising:

histPdist

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