Saturday 05/02/15

10:00 am – 1:00 pm

MERFISH analysis

  • managed to get L11_jumbled data through the pipeline
  • counts look low
  • explored two lower thresholds (original was at 1000), tested 400 and 700
  • these actually make more the cell-by-cell correlations lower. Tested higher 1600 threshold that looks a bit better
  • this threshold effect might be just the issue of including FLNA and THBS1 and getting zeros for low genes plus something for these — not sure it is a good guide.
  • the hybe-hybe data does not look very clear
bitBias(3)

bitBias(3)

corrFig

corrFig

corrFig(1)

corrFig(1)

corrFig(2)

corrFig(2)

corrFig(3)

corrFig(3)

geneBias

geneBias

geneBias(1)

geneBias(1)

geneBias(2)

geneBias(2)

geneBias(3)

geneBias(3)

bitBias

bitBias

bitBias(1)

bitBias(1)

bitBias(2)

bitBias(2)

Ph paper

  • revised model discussion again.
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