9:30 am – 9:45 pm
Manuscript Revisions
Discussions with Jeff and Bogdan
- move pairing discussion to end of volume scaling paragraph.
- (now addressed in version 8-5).
- show only volume not rg in extended data on higher order effects
- (BB will address in revised figure)
- add analysis of CoV to ED figure 4
Communications with Mirny team
- LE model does not have 0.3 rg scaling
- probably leave off for now?
writing
- added comment on comparison of differences of silent and repressed with HiC
- revised discussion of pairing.
Figure modifications
- encorporated CoV analysis into ED figs 3 and 4.
Reorganizing
- reorganized code for fig 1 — all from allData.matb
- still need to track down some missing vlists
- identified 8 domains in our most recent list of domains that are still not included in allData. Includes a number of internal domains. Annotated these in excel. (NewMasterTable_1ColorData)
- need a similar structure for the 2 color data for Fig 2 and 3, can do tomorrow
- should convert the model simulations results to a matb files as well for easy access for BB
Conference Prep
- booked hotel for SDB
- booked flights for ASBMB
- still need to book flights for SDB. Kayak recommends wait.