Code updates

• updated with new data from snail mRNA counting (1x 4x and promoter studies)

  m Unsupervised_DotFinding.m
  m Unsupervised_DotFinding2.m
  m Unsupervised_DotFinding3.m
  + Unsupervised_DotFinding4.m
  + Unsupervised_DotFinding5.m
  + Unsupervised_DotFinding6.m
  + Unsupervised_DotFinding7.m
  + cyto2nucmap.m
  m fxn_nuc_seg.m
  + fxnclean_v2.m
  + fxnproject_color.m
  + imclean.m
  + imclean_1.mat
  + imclean_2.mat
  + imclean_3.mat
  + imnucseg_pars0.mat
  + imnucseg_pars1.mat
  + imnucseg_pars2.mat
  + imnucseg_pars3.mat
  + imviewer.m
  + imviewer_0.mat
  + imviewer_1.mat
  + imviewer_2.mat
  + imviewer_3.mat
  m imviewer_lsm.m
  m jacquestiffread.m
  + mycontrast.m
  + pathdef.m
  

  updated with new data from snail mRNA counting (1x 4x and promoter studies)

• Added and then updated imviewer – a projection and manipulation script, and imclean for orienting embryos and changing color channels

  m Unsupervised_DotFinding.m
  m Unsupervised_DotFinding2.m
  m Unsupervised_DotFinding3.m
  m imviewer_lsm.m
  

  Added and then updated imviewer - a projection and manipulation script, and imclean for orienting embryos and changing color channels

• Revised parameters on latest cc13/early mRNA dynamics analysis

  m Unsupervised_DotFinding2.m
  m Unsupervised_DotFinding3.m
  m imviewer_lsm_pars1.mat
  

  Revised parameters on latest cc13/early mRNA dynamics analysis

• Fixed bug in find unique dots for CheckDotUpDown.m

  m CheckDotUpDown.m
  m Unsupervised_DotFinding3.m
  

  Fixed bug in find unique dots for CheckDotUpDown.m

• Merge branch ‘Alistair’ of github.com:AlistairBoettiger/Image_Analysis

  m CheckDotUpDown.m
  m CheckDotUpDown.m~
  m Unsupervised_DotFinding.m
  m Unsupervised_DotFinding.m~
  m Unsupervised_DotFinding2.m
  m Unsupervised_DotFinding2.m~
  m Unsupervised_DotFinding3.m
  m imviewer_lsm.m
  m imviewer_lsm.m~
  

  Merge branch 'Alistair' of github.com:AlistairBoettiger/Image_Analysis
  
  Conflicts:
  	CheckDotUpDown.m
  	Unsupervised_DotFinding.m
  	Unsupervised_DotFinding2.m
  	Unsupervised_DotFinding3.m

• revised dotfinding scripts to export connected paths between associated dots.

  m CheckDotUpDown.m
  m CheckDotUpDown.m~
  m Unsupervised_DotFinding.m
  m Unsupervised_DotFinding.m~
  m Unsupervised_DotFinding2.m
  m Unsupervised_DotFinding2.m~
  m Unsupervised_DotFinding3.m
  m imviewer_lsm.m
  m imviewer_lsm.m~
  

  revised dotfinding scripts to export connected paths between associated dots.

• running snail data on revised dotfinding script

  m CheckDotUpDown.m
  m Unsupervised_DotFinding.m
  m Unsupervised_DotFinding2.m
  m Unsupervised_DotFinding3.m
  

  running snail data on revised dotfinding script

• Merge branch ‘Alistair’ of github.com:AlistairBoettiger/Image_Analysis

  m CheckDotUpDown.m
  m CheckDotUpDown.m~
  m Unsupervised_DotFinding.m
  m Unsupervised_DotFinding.m~
  

  Merge branch 'Alistair' of github.com:AlistairBoettiger/Image_Analysis

• Running nuc seg from Monet

  m CheckDotUpDown.m
  m im_nucseg.fig
  m im_nucseg.m
  

  Running nuc seg from Monet

Digest powered by RSS Digest