Code updates

  • updating other changes in directory. Old files may get restructured here soon into subdirectories.
    + .gitignore
    + Perry2011PNAS/read_planeT.m
    m Unsupervised_DotFinding.m
    + imclean.fig
    m imnucseg_pars0.mat
    m imnucseg_pars1.mat
    + imviewer.fig
    + imviewer_lsm.fig
    m imviewer_lsm.m
    m jacquestiffread.m
    
    updating other changes in directory.  Old files may get restructured here soon into subdirectories.
  • ImageShop moved into MatlabPhotoshop
    + MatlabPhotoshop/ImageShop.fig
    + MatlabPhotoshop/ImageShop.m
    + MatlabPhotoshop/LSM2image.m
    + MatlabPhotoshop/LSMextract.m
    + MatlabPhotoshop/LSMread.m
    + MatlabPhotoshop/Ncolor.m
    + MatlabPhotoshop/Readme.md
    - MatlabPhotoshop/TiffViewer.m
    + MatlabPhotoshop/readLSMmatfile.m
    - MatlabPhotoshop/uiopen.m
    
    ImageShop moved into MatlabPhotoshop
  • updating readmes in publication file, added additional dependent function.
    m Boettiger2013CellReports/ImageAnalysis/Readme.md
    + Boettiger2013CellReports/ImageAnalysis/read_planeT.m
    
    updating readmes in publication file, added additional dependent function.
  • Updating published ImageAnalysis code, now organized by subdirectory folders.
    m Boettiger2013CellReports/DataAnalysis/Readme.md
    + Boettiger2013CellReports/ImageAnalysis/AssignDots.m
    m Boettiger2013CellReports/ImageAnalysis/Readme.md
    + Boettiger2013CellReports/ImageAnalysis/im_nucseg.fig
    + Boettiger2013CellReports/ImageAnalysis/imviewer_lsm.fig
    + Perry2011PNAS/Readme.md
    + Perry2011PNAS/fxn_nuc_reg.m
    + Perry2011PNAS/fxn_nuc_seg.m
    + Perry2011PNAS/im_nucseg.m
    + Perry2011PNAS/imclean.fig
    + Perry2011PNAS/imclean.m
    + Perry2011PNAS/imreadfast.m
    + Perry2011PNAS/imviewer.fig
    + Perry2011PNAS/imviewer.m
    + Perry2011PNAS/imviewer_lsm.fig
    + Perry2011PNAS/imviewer_lsm.m
    + Perry2011PNAS/jacquestiffread.m
    
    Updating published ImageAnalysis code, now organized by subdirectory folders.
  • Added separate folder with cod for CellReports publication
    + Boettiger2013CellReports/DataAnalysis/MakeFigure1.m
    + Boettiger2013CellReports/DataAnalysis/MakeFigure2.m
    + Boettiger2013CellReports/DataAnalysis/MakeFigure3.m
    + Boettiger2013CellReports/DataAnalysis/MakeFigure4.m
    + Boettiger2013CellReports/DataAnalysis/MeasureSnaGradient.m
    + Boettiger2013CellReports/DataAnalysis/Readme.md
    + Boettiger2013CellReports/DataAnalysis/plotstackdots.m
    + Boettiger2013CellReports/ImageAnalysis/CheckDotUpDown.m
    + Boettiger2013CellReports/ImageAnalysis/Readme.md
    + Boettiger2013CellReports/ImageAnalysis/Unsupervised_DotFinding.m
    + Boettiger2013CellReports/ImageAnalysis/dotfinder.m
    + Boettiger2013CellReports/ImageAnalysis/fxn_nuc_reg.m
    + Boettiger2013CellReports/ImageAnalysis/fxn_nuc_seg.m
    + Boettiger2013CellReports/ImageAnalysis/im_nucseg.m
    + Boettiger2013CellReports/ImageAnalysis/imreadfast.m
    + Boettiger2013CellReports/ImageAnalysis/imviewer_lsm.m
    + Boettiger2013CellReports/ImageAnalysis/jacquestiffread.m
    + Boettiger2013CellReports/ImageAnalysis/makeuint.m
    
    Added separate folder with cod for CellReports publication
  • other minor updates.
    m imnucseg_pars0.mat
    m imnucseg_pars1.mat
    m imviewer_lsm.m
    m view3Ddots.m
    
    other minor updates.
  • minor tweaks to TiffViewer
    m MatlabPhotoshop/TiffViewer.m
    
    minor tweaks to TiffViewer
  • updated running new data (should make this into a function some day).
    m cyto2nucmap.m
    
    updated running new data (should make this into a function some day).
  • CheckDotUpDown.m was giving bybassable error, now averted with a try/catch statement.
    m CheckDotUpDown.m
    
    CheckDotUpDown.m was giving bybassable error, now averted with a try/catch statement.

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