9:30 A – 7:00 P, 8:15 P – 11:00 P
chromatin
- got 10 kb segments to run. Still lots of crashes, some substantial regions lack probes
- if we’re fragmenting sections so we have to stitch backtogether, might as well do all separate fasta files separate commands. Running 1kb single entry fasta files. Hopefully its just a few sections that crash.
- Server very full, all jobs stuck in PEND queue for hours…
- Run through feducial drift correction
- Ydc and Bdc were done with 100nm beads — much less bright, need to change insight parameters and re-run.
- processed all Green drift-corrected data. thresholds were a bit low on data fitting — some smears of bright regions interfere with local dots.
Review issues
- see post
project 2
- small group meeting
- team meeting
- data analaysis
- see protected post.