Wednesday 01/08/14

10:00a – 5:30p, 9:30p – 11:30p

Ph project

  • Ph project model figures for Ajaz. See post
  • Reorganized figure producing code (see Code\Results)

Chromatin analysis

  • copying F05 data over to Probox 7
  • Running analysis of F03 and F04 while copying data to same disk not good for drive communication speed. makes it very hard to analyze data off the same disk at this same time.
  • this is in fact a known bad idea. Cancelling data copying.

Library design

  • screening HiC data for off diagonal contacts.
  • need to go back and choose a region inbetween as control comparison.
  • region selection maps

OffDiag_HiC_contacts_reg1
OffDiag_HiC_contacts_reg3
OffDiag_HiC_contacts
OffDiag_HiC_contacts_2Rreg2
OffDiag_HiC_contacts_2Rreg1

STORM

  • Overnight imaging of BX-C composite (F03 + F04 + F05 P1s).
  • clusters look pretty good.
  • focus lock having more serious issues as several positions on this coverslip. Will probably lose focus at some point in the night.

Discussions

  • discuss probe design with Sebastian for yeast.
  • Will help generate probe sets tomorrow
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