Saturday 01/25/13

Posted on January 25, 2014 by admin

10:30a – 5:30p, 7:00p – 8:00p
remotey 9:30p – 11:45p

Chromatin Project

Data analysis / code development: ChromatinCropper

Integrating 3D images

  • working on 3D image masks.
  • Fixed up Stats2DScatter
  • currently hard-coded in z-range is -300 300 corrected x4. Our calibration curves are substantially off. Should stick some small beads on cells sometime soon and recompute these curves.
  • should filter out spots and recall the list2img, not create binary masks.
  • need to export area masks for XZ as well.

New functions

  • MaskMoleculeList

Start data analysis

  • Analyzed new BXC data
  • Analyzed G9 data
    • has some big spots as well as small ones, and some substantial variation
    • some of this may be due to pairing
    • maybe larger polycomb domains hold better compact.
    • propose an additional evolutionary pressure to cluster the genes.
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