Thursday, 5/22/14

10:00a – 10:00p

Polymer sims

  • periodic loops and sticky

  • show more positive slope than just perodic loop model did (substantially).

  • equilibrate slower.

PolymerPeriodicLoopsAndSticky

observations for yellow

  • small 10-35 kb regions seem to be larger than expected by scaling extrapolated back from the bigger regions — maybe there is a typical contact length here?
  • simulate typical scale contact (fixed pairwise contacts, average of 10 nodes.
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