9:30a
Lib5 prep
- need to split up black regions
- spent several hours needlessly parsing lib3 to encoproate into lib5.
- building stringent BLAST against highly expressed sequences and ribosome sequences.
Discussions
- discussing with Junjie methods for statistical testing of data, methods of cross-talk subtraction, and methods of data normalization
- Cut ~1000+ probes (~2% of probes) based on this final BLAST.
Reconfiguring Mosaic Viewer for Guiping
files, locations and descriptions
mosaic_to_matlab.py (now a part of storm-control/steve)
stv2mat.m — just calls the python script mosaic_to_matlab.py. Latest example saved in Chromatin/Scripts
viewSteveMosaic.m — function written to render the new .stv / .mat formatted steve files. part of matlab-storm\GUIs\Library\STORMrender\.