Author Archives: admin

Friday 05/02/14

Posted on May 2, 2014 by admin

9:00a – 6:30p, 11:45p – 1:45a STORM hard-drive disconnected itself somehow in the wee hours of the morning (must have been around 5 or 6am) reconnected drive, continued collecting data. focus lock gets hella confused at certain positions — full … Continue reading →

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Protected: project 2: coding 5/01/14

Posted on May 2, 2014 by admin

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Thursday 05/01/14

Posted on May 1, 2014 by admin

8:30a — 11:00p OligoArray development writing new batch processing functions to run OligoArray with sbatch on Odyssey. encorporating new functions into matlab-functions. Pulled matlab-storm, matlab-functions, and storm-analysis repositories into my remote folder on Odyssey /n/home05/boettiger/ debugging remote OligoArray launcher. A … Continue reading →

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Wednesday 04/30/14

Posted on April 30, 2014 by admin

9:00a – 8:35p Project 2 see post. Chromatin project still imaging G08G06 sometime rather abruptly between 9a and 11a the 750 dyes completely stopped switching off. Microscope stuff Installing and aligning dual-view on STORM3 figured out how to exchange dichroic … Continue reading →

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project 2 update: 04/30/14

Posted on April 30, 2014 by admin

rRNA continued Goals: do we have all the abundant rRNA transcripts annotated and assembled into our fasta file for screening? Annotate FPKMs into list of rRNA and tRNA more stupid issues not getting the right genes There are yeast genes … Continue reading →

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Tuesday 04/29/14

Posted on April 29, 2014 by admin

9:30a – 10:00p Computer Cajal troubleshooting computer behaving very sluggish today, denying connections restarted Cajal. also removed all the memory DIMMs and reinstalled them. Cajal now recognizes 48 GB of RAM again (instead of just 24 GB). Project 2 moved … Continue reading →

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Monday 04/28/14

Posted on April 28, 2014 by admin

9:00a – 4:50p, 9:30-9:55p STORM coding stuff Code Organization Moved WarpPoints.m and CorrAlign.m into ChromeWarps Commited GitScripts, matlab-functions and matlab-storm z-calibration issues Jeff reports substantial differences between beads and single-molecules on the 10-15% scale should still be valid for separating … Continue reading →

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Sunday 04/27/14

Posted on April 28, 2014 by admin

Goals: Read and send comments on latest version of Ajaz’s manuscript project 2 update write to XZ about poster for HHMI meeting write to XZ about June application for K99 Progress Project 2: see post Finished reading commenting up through … Continue reading →

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Protected: project 2 update 04/28/14

Posted on April 28, 2014 by admin

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Saturday 04/26/14

Posted on April 26, 2014 by admin

coding working on rewrite of chromewarp code: ComputeChromeWarp.m this is now a properly functioning and tested function. Needs to be integrated into STORMfinder. should operate with a simplier menu — would like to be able to specify a list of … Continue reading →

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