May 2024 M T W T F S S « Aug 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 Categories
- AP patterning (13)
- Blog (1)
- Chromatin (88)
- Conference Notes (72)
- Fly Work (54)
- General STORM (25)
- Genomics (134)
- Journal Club (22)
- Lab Meeting (66)
- Microscopy (79)
- Notes (1)
- probe and plasmid building (58)
- Project Meeting (3)
- Protocols (13)
- Research Planning (74)
- Seminars (21)
- Shadow Enhancers (59)
- snail patterning (40)
- Software Development (5)
- Summaries (1,412)
- Teaching (9)
- Transcription Modeling (40)
- Uncategorized (10)
- Web development (19)
Links
Tags
analysis cell culture cell labeling chromatin cloning coding communication confocal data analysis embryo collection embryo labeling figures fly work genomics hb image analysis image processing images in situs Library2 literature making antibodies matlab-storm meetings modeling MP12 mRNA counting Ph planning presentation probe making project 2 project2 result results sectioning section staining shadow enhancers sna snail staining STORM STORM analysis troubleshooting writing-
GitHub Projects
Category Archives: Web development
Biophysics page web-development
Progress on removing comments: Turning comments off removes comments only on unmade pages. Deleting on page-loop.php the reply section effectively removes from supporting pages (maybe not the home page / posts reply). Try the post-loop.php? Image upload not fixed by … Continue reading
Posted in Web development
Comments Off on Biophysics page web-development
shared multi-user git repo
Notes on making a github public repository into a shared project modifiable on multiple computers by multiple users. (Applied today for my GitHub project AlistairBoettiger/Image_Analysis, added user AlistairMobile. First new users need github account. Then need git installed on the … Continue reading
Posted in Web development
Leave a comment
Code maintenance
Purge binary data files from git repository to shrink repository size. $ bash git-delete-history.sh binarydata.mat Uses script from David Underhill git-delete-history.sh Push updates to online repository to overwrite history (using force): $ git push origin master –force Ran on all … Continue reading
Posted in Shadow Enhancers, Web development
Leave a comment
Common git commands
Making notes of common git commands: From within the file directory (PATH$), remove files which have been deleted: $(git ls-files –deleted) delete all removed files, update whatever was modified, add new files $git add -u [Neither of these remove from … Continue reading
Posted in Web development
Leave a comment
Reflections
If I have a coding problem (such as the python scripts I was coding today) I can with the click of a button ask a question of the whole world–and within minutes to days, get replies from experts everywhere. A … Continue reading
Posted in Web development
Leave a comment
Image database ideas
Something to consider: Picasa hosting for all data ($5/yr 20GB). snail boundary data is 1.5 GB, Shadow data is 6.5GB. All Raw data is 310 GB. Adventages: make available to public upon publication share with co-authors access data anywhere permanent stable … Continue reading
Posted in Web development
Leave a comment
Migrating Research Website
Recreating research / personal website as a wordpress site on alistairboettiger.info.
Posted in Web development
Leave a comment
Notebook Editing
Added Authors specific folder from pubmed to google reader.
Posted in Web development
Leave a comment
Notebook updates
added MathJax plugin for imbedded latex. Doesn’t seem to work. Switched to wp-latex. This works: $latex e^{\i \pi} + 1 = 0$ Also install WP-table Reloaded for table editing Migrate Fly database to online hosting
Posted in Web development
Comments Off on Notebook updates