Monthly Archives: November 2015

Wednesday 11/18/15

Posted on November 18, 2015 by admin

10:30 am – 7:00 pm Tasks formatting figures for Ph Polymerization paper. sent final version of figures to team. discussion with XZ about proposal. Phone interview (3pm -3:30pm) discuss model fitting with GF, reply to team with conclusions. Recently complete … Continue reading →

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Tuesday 11/10/15

Posted on November 10, 2015 by admin

10:00 am Tasks Manuscript Revise response to reviewer 1 Figure updates change blue color fix symbols discussed changes with XZ again Fastq files run 1: 150902_NS500422_0189_AHHNKFBGXX Illumina HiSeq 2500, 100 bp single read, rapid flowcell run 2: 151030_SN343_0533_AC8CW1ACXX Illumina HiSeq … Continue reading →

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Monday 11/09/15

Posted on November 9, 2015 by admin

12:30 pm – 11:30 pm (HHS appointment in morning for crushed foot). Making RNA probes through old method as a control for RNA staining quality found sna and hb probe templates hb tube is empty, attempted to dissolve DNA from … Continue reading →

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Friday 11/06/15

Posted on November 6, 2015 by admin

(Wed and Thur in NYC for Dale Frey interview) 9:30 am – 7:00 pm sequencing data processing bowtie finished running on all the datasets (20) Need to run cufflinks. first need to sort sam data using sam tools (should have … Continue reading →

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Tuesday 11/03/15

Posted on November 3, 2015 by admin

9:00 am – 7:30 pm Library building code fixed bugs in library design — can’t call TRDesigner with parallel pool with large off-target libraries. it takes a ton of time and a ton of memory to replicate these large OTTables … Continue reading →

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Monday 11/02/15

Posted on November 2, 2015 by admin

9:15 am – 6:00pm, 8:00pm – 8:55 pm Library building goal: building 10 kb tiling regions of BX-C probes against genome approach: adapt new OligoArray-free pipeline from transcriptome libraries to design genome libraries Problems crashed Morgan when all 256 GB … Continue reading →

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Protected: Sunday 11/01/15

Posted on November 1, 2015 by admin

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Saturday 10/31/15

Posted on November 1, 2015 by admin

12:00 pm – 6:30 pm, working on applications Submitted all apps with Nov 1st deadlines.

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