Ph Project
- working on simulations
Assume certain amount of open sites. All will be fill with no Ph.
Add PhM. The same fraction of PhM will be bound as the fraction of Ph bound, since the kinetics are the same.
start with 500 unbound and 1500 bound with no PhM, all sites occupied, eq constant 7:1 bound
as we add PhM, it fills and kills sites, only need 1 per site to kill it (if capped early). Sites tend to either fill to max or get capped as created.
Strong transition point at PhM = PhE/2.
Rendering
- improved rendering: scatter is proportional to cluster size
- should zoom in more — difficult because matlab makes chain look disconnected where it goes outside of frame.
- should look up how to set zoom by command line (manual scroll does not work smoothly as it should).
Summary
- See email to Nicole and Ajaz describing today’s results.