9:50 A-7:00P
- O/N confocal run not completed. Increased speed to 6, running until 2p.
- Trying to run daoSTORM3d. path files all screwed up, won’t work.
- Fixed path files (hazen has a script which can be called prior to execution).
- To send multiple consecutive commands to the same command prompt from matlab, start command with ‘!’ and separate commands with ‘ && ‘ . eg
! command1 inputs1 && command2 && command3
- Functional script now saved on Tuck in GeneralSTORM/Code/.
- Confocal scan not fully finished by 2pm. Little expansion on 780 scope. However this means that most files in m109 dataset start on section 18 and are not fully through the cytoplasmic snail by section 60. Will need to cut some of these embryos from analysis.
- Run analysis of Pc-647 data. No obvious visual differences in Pc structure or concentration with embryo age. Analysis could be more systematic.
- Running new image analysis on old Psc-K27 data. New vector data should be better for detailed computations of distances.
- Issues with chromatic warps from old data being way off.
- can’t use 3D warp from 2D bead data!
- finishing analysis of ml data sent by disk