Coding projects to do:

mRNA counting package

  • change fname to include slidedate folder as well as fileroot in all major scripts: Unsupervised_Dotfinding, Analyze_data, Plot_data scripts

STORM analysis

  • Matlab wrapper for multifit Daostorm (to run locally).
    • Finished and running smoothly on Tuck, 09/16/12
  • Modify insightM wrapper to count total processes running
    • Finished for all insightM platforms, in new Matlab_STORM directory / Git Repo.
  • Matlab wrapper for mufit Daostorm (to run on server)
  • Rewrite all my STORM analysis matlab functions with varargin inputs and detailed help files for toolbox.
    • Converted to new format:
    • fxn_vectorSTORM
    • Run_insightM
    • Run_DaoSTORM
    • GenGaussianSRImage
  • Package all STORM analysis functions into separate toolbox, including the quality functions developed by Jeff.  Set up as a separate Git Repo.
    • Repo initialized 9/13/12
  •  GUI wrapper for STORM analysis
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