Thursday 09/19/13

9:00a – 7:45p, 10:00p – 11:00p

Writing

Referee work

• working remotely (9a-12p)
• write up comments

BJ review

• Goal: Trim down BJ review by 3 of 16 pages
• started trimming from beginning. 1 full page shorter.

mRNA indexing

• human genome 22917 primers kept at 13 or less homology of 25 bp. (After parallel processing analysis)
• Patterns of Drosophila genes in 100 kb region
• PausePlayPlayPrev|Next

  

  CG11127

  

  p47

  

  Aldh-III

  

  CG1620

  

  CG1621

  

  dpa

  

  az2

  

  CG1602

  

  CG1600

  

  CG1598

  

  G8_poordetection

  

  G4_STORM_sample

  

  G8_undersampled

  

  G6_tubregion_sample

Review recent STORM data

• some samples, G4 G6 and G8:
• 

* G8 might be good to repeat — low intensity, sparse samples:
*

STORM

• attempting new STORM of G8
• switching much better in sample 1, buffer is better
• however, overall staining very weak, not obvious in all cells and bleaches fast.
• probably need to make probe at higher concentration.

Coding

• helping Hao with spot-counting code
• debugged image alignment
• saved new version
• Couldn’t find fast-forward fork
• did work to submit pull request and merge that, after swapping the compare branches.

Domestic

• prep for NH trip
• pick up stove, fuel, sleeping bag, pad, pot.
• check for iodine

Domestic

• submit reimbursement paperwork for Banff (charge to fellowship funds)
• contact Matt about Mexico (charge to fellowship funds)
• contact Matt about healthcare reimbursements