9:45a – 8:00p, 1:00a – 2:00a
General
- Group meeting cancelled
- XZ meeting cancelled
Ph modeling
- Discuss analysis methods with Jeff
- Moment comparisons. nmin / cv^2 way different than 1, definetely not exponentional (also obvious by visual inspection, median 4-7, mean often 100+
- I think this results from once a cluster is superbig, it only can lose molecules one per timestep and runs into these same molecules again — much of the time they don’t even diffuse away to a new pixel before recapture.
- potential solution / elaboration — need lower binding affinity — not all molecules that collide will cluster.
- didn’t finish implementing this in code.
Advising
- Getting Bogdan setup on Cajal with Admin and as a Collaborator on GitHub matlab-storm
- Helping Hao troubleshoot issues with spot alignment analysis software.
- Reviewing STORM imaging with Bogdan
STORM
- continuing STORM of black chromatin regions