Tag Archives: coding

Tuesday 10/02/12

Posted on October 2, 2012 by admin

9:15A – 8:00P, 9:00P-11:00P Drop-off poster USB at MCB graphics for printing (using FAS secure file delivery) Discussing fixation and reduction with Jeff, sent Drosophila and cell fixation protocols. Pick up printed poster Pick up Drosophila from Bloomington from mailroom … Continue reading →

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Monday 10/01/12

Posted on October 1, 2012 by admin

9:30 A – 7:00P, 8:30P – 11:00P Finished integrating STORMcuts and STORMrender.  Moved primary function call to separate directory (routines). Jeff M lab meeting. Send info on metabolic labeling/DTA (dynamic transcriptome analysis) ordered pyranose oxidase (use at 3U/mL instead of … Continue reading →

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Friday 09/21/12

Posted on September 21, 2012 by admin

(Working remotely from Berkeley) Ideas: can I have the analysis script call Git bash and update the code with a ‘run to export images’ (check with Carl?) export a text file at the same time as it writes an image: … Continue reading →

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Thursday 09/20/12

Posted on September 20, 2012 by admin

(Working remotely from Berkeley) Fixed issues with passing variables in current GUI for STORM rendering.  Just declare all shared parameters as global instead of passing them around as fields in the GUI handles structure.  This saves a lot of commands … Continue reading →

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Wednesday 09/19/12

Posted on September 19, 2012 by admin

9:30 A – 2:45P Working on GUI somehow the zoom button isn’t getting passed the correct minx and miny, even though these sit in the handles structure and it is getting passed the correct handles.zm !!!! WTF. Rest of navigation … Continue reading →

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Tuesday 09/18/2012

Posted on September 18, 2012 by admin

9:20 A – 7:30P, call about shoes http://www.scottishclansman.com/brogues.htmlin Vallejo see also for ordering http://www.kilts-n-stuff.com/contact-info.html Banff meeting organization write to co-organizers about feasibility of Feb conf. Pick up flies from mailroom! STORM code development Finalized function GenGaussianSRImage as a wrapper for … Continue reading →

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Monday 09/17/12

Posted on September 17, 2012 by admin

9:30 AM – 7:30PM, 9:00P – 11:00P Start Unsupervised_Dotfinding for mRNA counting of sog data. Troubleshooting error with list2img for movie2vectorSTORM: not outputting Gaussian image Getting GPU gaussian blobs script to work — test script works great Lab meeting (Shu: … Continue reading →

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Installing DaoSTORM for windows

Posted on September 14, 2012 by admin

Into the rabbit hole! DaoSTORM requires 64 bit C-libraries, which requires a 64 bit compiler, which to build first requires an installation of a c-32 bit compiler.  Also requires Fortran libraries in Lapack which requires the program CMAKE to install … Continue reading →

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DaoSTORM for Matlab

Posted on September 13, 2012 by admin

  mufit starts writing  bin files immediately (good for memory) First we need a watcher: A good introduction to using WMIC http://isc.sans.edu/diary.html?storyid=2376 (Windows Management Instrumentation Command) [status result] = dos(‘wmic process where name=”python.exe” list brief’); running = strfind(result,’python.exe’); Running head-to-head comparison of … Continue reading →

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Thursday 09/13/12

Posted on September 13, 2012 by admin

9:00 A – 4:00P, + remotely 5:00P-7:20P, 8:20P-11:20PM O/N STORM run still going smooth and in focus at 8:00 AM. O/N STORM run completes on time, 9:30AM.  Break down run turn off scope. Coding Coding matlab wrapper for python / … Continue reading →

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