Tag Archives: coding

Thursday 01/26/12

Posted on January 26, 2012 by admin

10:00 A – 7:15 P revise JCC proposal, send to Carl and DB. resin embedding of direct labeled multi-histone modification tagged embryos Finished writing new imclean GUI, orients, trims, and recolors embryos.   Updated git repo. updated JCC figure, sent … Continue reading →

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Sunday 12/25/11

Posted on December 25, 2011 by admin

writing new script for analyzing batches of snail data.  Using each slide as separate case called through the slides and switch command. fit sigmoids to right half of data compute coefficient of variation and mean expression for ‘on’ cells, defined … Continue reading →

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Tuesday 11/22/11

Posted on November 22, 2011 by admin

10:00 A – 8:00P, 9:00P-10:00P Finishing annotation of revised CheckDotUpDown code to do 3D dotfinding. Running test analysis of MP06 data. New method for finding unique spheres is easier to read but much much slower, need to find some solution … Continue reading →

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Setting up git on new computer to use existing projects

Posted on November 22, 2011 by admin

following this guide: Need Putty.zip from here using latest mysys git on system files. didn’t seem to get the option to use Plink, but I’m used to running push pull from the bash.  It useful to see the gitGUI log from … Continue reading →

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Tuesday 07/12/11

Posted on July 12, 2011 by admin

8:15 A — tried high threshold on high consecutive layers for MP06 counts, need to repeat with standard trial set of inputs. Rewriting hb-curve plotting to compute means of multiple gradients (using interp1 so curves can be matched on x-axis). … Continue reading →

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