December 2024 M T W T F S S « Aug 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 Categories
- AP patterning (13)
- Blog (1)
- Chromatin (88)
- Conference Notes (72)
- Fly Work (54)
- General STORM (25)
- Genomics (134)
- Journal Club (22)
- Lab Meeting (66)
- Microscopy (79)
- Notes (1)
- probe and plasmid building (58)
- Project Meeting (3)
- Protocols (13)
- Research Planning (74)
- Seminars (21)
- Shadow Enhancers (59)
- snail patterning (40)
- Software Development (5)
- Summaries (1,412)
- Teaching (9)
- Transcription Modeling (40)
- Uncategorized (10)
- Web development (19)
Links
Tags
analysis cell culture cell labeling chromatin cloning coding communication confocal data analysis embryo collection embryo labeling figures fly work genomics hb image analysis image processing images in situs Library2 literature making antibodies matlab-storm meetings modeling MP12 mRNA counting Ph planning presentation probe making project 2 project2 result results sectioning section staining shadow enhancers sna snail staining STORM STORM analysis troubleshooting writing-
GitHub Projects
Tag Archives: calibration
3D chromatic warp: Insight vs DaoSTORM
Results using 2013-13-02 Bead Data: Z-calibrations for this data set look pretty similar Comparing Chromatic warping DaoSTORM is actually getting a better fit and tighter warp, but not managing to get the same dynamic range in Z — only +/- … Continue reading
Posted in General STORM
Tagged calibration, coding, images
Comments Off on 3D chromatic warp: Insight vs DaoSTORM
z-calibration: Insight vs DaoSTORM
with single iteration, Hazen 3D-DaoSTORM avoids splitting molecules more distant from frame A few notes on 3D-DaoSTORM First 4 iterations are computed with 4x the input threshold. So if using less than 4 iterations you want to quarter the threshold … Continue reading
Posted in General STORM
Tagged calibration, coding, images
Comments Off on z-calibration: Insight vs DaoSTORM