Author Archives: admin

Friday 09/11/15

Posted on September 11, 2015 by admin

Manuscript paper revisions finalizing response to reviewers with BB comments discuss updated comments with XZ Figure changes to do Figure 1 Add Pc knockdown results to panels c and d (remove ED Fig d) Figure 2, no change Figure 3 … Continue reading →

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Thursday 09/10/15

Posted on September 10, 2015 by admin

9:30 am – 7:00 pm Finalizing draft of response to reviewers polishing figures a bit (removing boxes, fixing axes etc) finish writing missing captions 9:30 am – 10:30 am communication catching up on communication emails (10:30 – 11:15) coffee with … Continue reading →

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Wednesday 09/09/15

Posted on September 9, 2015 by admin

9:15 am – 5:10 pm, 8:00 pm – 11:00 pm Response to review letter comparisons with conventional imaging working on deconvolution went back to fully automated quantification of conventional images using half max to address thresholding — works pretty well. … Continue reading →

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Tuesday 09/08/15

Posted on September 8, 2015 by admin

9:00 am – 8:00 pm Revising manuscript New versions of all the main figures and all the extended data figures now started. Figure items: Still need to do deconvolution of conventional images add anti-aliased full size conventional images analysis of … Continue reading →

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Monday 09/07/15

Posted on September 7, 2015 by admin

10:15 am – 8:40 pm, 9:40 pm – 12:00 am tasks discuss quantification approaches for live data working on figures practice talk for CONTI retreat/review working on figures (see git and figure notes)

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Protected: notes 09/07/15

Posted on September 7, 2015 by admin

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Grant review

Posted on September 5, 2015 by admin

CONTI grant evaluation meeting organization first: Tako Hensch, microRNA — AGO2 is imprinted Lichtman then Dulac then us? Bogdan Talk: Chromatin structure ‘identical’ probably too strong for imprinted genes one allele is 1.5-2x larger than the other in imprinted tissue … Continue reading →

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Friday 09/04/15

Posted on September 4, 2015 by admin

9:00 am – 8:00 pm Presentations rehearsing lab meeting presentation (9am-9:30am) start cufflinks running on newly aligned NextSeq data (9:30 am – 10:00 am) lab meeting, 10am – 12:30 pm playing with deep seq data (needed to rerun cufflinks, overwrote … Continue reading →

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Thursday 09/03/15

Posted on September 3, 2015 by admin

9:00 am – 7:10 pm, 9:00 pm – 10:00 pm, Goals finish lab meeting presentation for tomorrow finish CONTE center presentation for tomorrow finish update slides for discussion tomorrow Analysis analyze WT ANTC-G6 data Morning tasks check STORM imaging movies … Continue reading →

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Wednesday 09/02/15

Posted on September 2, 2015 by admin

10:00 am – 8:00 pm, 9:00 pm – 11:20 pm Ph KD BXC-F6 further imaging STORM sample chamber contaminated by Draq5 — can’t see dye switching CycA cytoplasmic antibody stain still present after hybridization Sample prep preparing new sample with … Continue reading →

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