Monthly Archives: December 2010

Protected: hunchback modeling

Posted on December 17, 2010 by admin

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Notebook updates

Posted on December 17, 2010 by admin

added MathJax plugin for imbedded latex.  Doesn’t seem to work. Switched to wp-latex.  This works: $latex e^{\i \pi} + 1 = 0$ Also install WP-table Reloaded for table editing Migrate Fly database to online hosting

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Fly Work

Posted on December 17, 2010 by admin

Give Perry vnd[D38] and brk[M68] gene deletion stocks. Flip collection cages for MP11/CyO, MP3/CyO, sna[18]/CyO; MP10s, 2:30 P Cross hkb::fog stock 1 x fog null virgins (10 vials) at 22C Organize stocks for hb rescue to set up crosses over … Continue reading →

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Markov Paper

Posted on December 17, 2010 by admin

Final edits: conversation of ‘IR/ER model’ to ‘IR/ER scheme’, (the models are ‘toy’ and ‘complex’, for which we compare two regulatory ‘schemes’). Upload Paper, Response to Reviewers, 6 Figures, Supplemental Text, 6 Supplemental Figures, Code with readme linking to webpage … Continue reading →

Posted in Transcription Modeling | Leave a comment

Protected: gap shadow paper

Posted on December 16, 2010 by admin

There is no excerpt because this is a protected post.

Posted in Shadow Enhancers | Enter your password to view comments.

BioE Presentations

Posted on December 16, 2010 by admin

Final day of student presentations, 8:00A – 12:30P.  Collect student reviews.  Should do these electronically next time, easier to save and share feedback. Need to print and read student final papers still.

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Markov Paper

Posted on December 16, 2010 by admin

Received Steve’s revisions of response to reviewers.  Read and submitted final edits back to Steve and Peter. Labeled and exported all figures as F1/S1_name.tif and .eps (Illustrator, vector graphics format).  Sent zipped tif files to Peter and Steve for conformation.

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hb shadow analysis

Posted on December 15, 2010 by admin

New analysis comparing boundary to central region fraction of cells off.  (Focusing on cc13, though result is the same in cc11 and cc12). Now conducting analysis of dominant anterior repression.

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Gap Shadow Paper

Posted on December 15, 2010 by admin

Boundary analysis in cc14 of temperature effects is the data in which we see that the shadow and primary alone are even worse at high temperature (30C)  than at 22C.  The control is better at 22C and does not change … Continue reading →

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Markov paper

Posted on December 15, 2010 by admin

Fixed figure 1 and S3 to label state 4 as 4B, keeping with dual state model.

Posted in Transcription Modeling | Leave a comment