Monthly Archives: January 2011

extending enhancer modeling to snail data

Posted on January 12, 2011 by admin

Variation in activation state among cells is uniformly 10 fold larger in all data samples than expected by binomial statistics (independent cellular response with fixed probability) Maybe we need to correct for borders, because the vast majority of these missing … Continue reading →

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Fly work

Posted on January 12, 2011 by admin

Flip collection cages: 10:40A Collect virgin DBTZ, DBTG (none), and w;Sp/CyO;Hb[D]/GFP 10:30A Collect virgins and males DBTZ and DBTG, 11:30 P

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Tuesday 01/11/10

Posted on January 11, 2011 by admin

10:20A — 9:00 P Collection cages day 2 of mating.  Flies starting to lay. Submitted application for LSF.  (updated research proposal). Python practice: converting enhancer simulations over to python.

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Reflections

Posted on January 11, 2011 by admin

If I have a coding problem (such as the python scripts I was coding today) I can with the click of a button ask a question of the whole world–and within minutes to days, get replies from experts everywhere.  A … Continue reading →

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Coding

Posted on January 11, 2011 by admin

Downloading scipy to facilitate migrating simulation of code into python. Some trouble-shooting, but it works fine now:

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Fly Work

Posted on January 11, 2011 by admin

Flip collection cages Collect MP3/CyO; Pr/HbZ and MP11/CyO; Pr/HbZ males Clear DBTG and DBTZ for virgin collection (to cross to MP04s) New crosses: 3A.1/CyO; Pr/HbZ x w; Sp/CyO; Hb[D]/GFP 3A.4/CyO; Pr/HbZ x w; Sp/CyO; Hb[D]/GFP 11A1.1/CyO; Pr/HbZ x w; Sp/CyO; … Continue reading →

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Image database ideas

Posted on January 11, 2011 by admin

Something to consider: Picasa hosting for all data ($5/yr 20GB).  snail boundary data is 1.5 GB, Shadow data is 6.5GB.  All Raw data is 310 GB. Adventages: make available to public upon publication share with co-authors access data anywhere permanent stable … Continue reading →

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Protected: Modeling hb-shadow data

Posted on January 10, 2011 by admin

There is no excerpt because this is a protected post.

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writing

Posted on January 10, 2011 by admin

Continuing work on manuscript draft “Effect of binding site number…” (Bicoid_limits_paper.tex).  Moved to dropbox folder for easy multi-site editing.

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Monday 01/10/10

Posted on January 10, 2011 by admin

10:00 A – 11:45 P, Done: modeling of hb-shadow data ~20 slides for lab meeting working on manuscript on bicoid enhancer modeling Missed: sort and cross hb rescues Flip fly stocks

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