Monthly Archives: November 2013

Protected: Saturday 11/30/13

Posted on November 30, 2013 by admin

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Protected: Friday 11/29/13

Posted on November 29, 2013 by admin

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Protected: Thursday 11/28/13

Posted on November 29, 2013 by admin

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Wednesday 11/27/13

Posted on November 27, 2013 by admin

Goals Sequencing analysis plots of coverage uniformity per probe set plots of failed probe vs. purity using new indexed method (or maybe just a length cut-off) Ph Project restart simulations Genomics start building library 4 (on Monet) start building library … Continue reading →

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Tuesday 11/26/13

Posted on November 26, 2013 by admin

9:15a -10:00p Goals Restart Fasta file building for genomics Coding removing GPU from STORMrender not compatible with CUDA 5.5 not restorable after CUDA update not distributable / not multiplatform Genomics Computer reboot terminated building gene list, around 60% complete Relaunched … Continue reading →

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Monday 11/25/13

Posted on November 25, 2013 by admin

9:10a – 11:45p Meetings Lab Meeting: private notes Journal Club: notes Mentoring Meeting Bogdan will explore length dependence in Blue domains BXC ~ 1900 nucleosomes — feasible scale for simulation Polymer simulations Bogdan attempting to get GPU accelerated openMM working … Continue reading →

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journal club 11/25/13

Posted on November 25, 2013 by admin

Jiang He Fluorescent proteins as a scaffold for cell-specific gene manipulation Background Lots of GFP lines not a lot of Cre / lox or Gal4 lines (etc) for manipulating gene expression. camilid VHH antigen binding domain (‘nanobody’). Previous work: different … Continue reading →

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Protected: group meeting 11/25/13

Posted on November 25, 2013 by admin

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Sunday 11/24/13

Posted on November 24, 2013 by admin

10:00a – 11:00a, 3:00p – 5:00p, 7:00p-12:30p Goals Deep Seq Analysis Analyze distribution along probe region of copy number variation Analyze sequence dependence of copy number variation If a sequence contains a deletion, do we also have that same sequence … Continue reading →

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Saturday 11/23/13

Posted on November 23, 2013 by admin

10:00a – 11:00p STORM2 Helping Guipeng and Ruobo get set up on STORM2. Cell staining prepping cells for hybridizaton. last row (4 coverslips) forgot to add last rinse of PBS. Cells dried out. Coverslips tossed. cells into formamide, ready for … Continue reading →

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