11:00 am – 5:00 pm, 10:00 pm – 11:55 pm
tasks
- break down STORM run
- # transfer data
- # fit molecule localizations
- finish compiling oligo-array output folders.
- finish writing review
- first complete draft finished.
- just need to read through this again from top to bottom and should be ready to go.
- revised and submitted
- work on slides for meeting with Ting group on Tuesday
STORM issues
- forgot to take bead images ! Darn it, I think this kills my last rather nice multi-color black data set.
Computing
Tuck doesn’t respond to process kill commands (at least not for many processes). (no idea why). window claims that kill command executed successfully, but task manager still reports that jobs are running. I suppose I should kill them in task manager directly. This is probably why Tuck lost so badly to Cajal in the probe design race (30K to 6K)
Control sequences still not the right length!
Perhaps I overwrote the 9-5 probes with the 9-4 probes run still with the wrong parameters (why 9-4 were wrong parameters I have no idea). Looking in the folder though the 9-4 probes are indeed the wrong length, and my collected list of probes contains the 9-4 versions. 9-5 and 9-6 folders are now empty — I guess they ‘moved’ rather than ‘copied’…
team-coding
- synced up with matlab-storm and matlab-functions with release / jeff
- still need to push my matlab-storm changes back up.
- Jeff’s matlab-storm updates broke STORMfinder find dots option.