Tag Archives: coding

Monday 01/28/13

Posted on January 28, 2013 by admin

9:45A – 10:00 P Lab meeting (notes) Fly work scored 5 more back-cross lines (no rescues still):  [spreadsheet 0AjSqkxgziU1YdENuMzFjejM0TnNXUEQ1OWdHRW1OY1E 602 202 sheet = 1] Flipped and watered bottle cross of Df/CyO,esc[2] x Sp/esc[6] males. New bottle cross of Df/CyO,esc[2] x Sp/esc[6] males … Continue reading →

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Coding goals ~01/26/13

Posted on January 26, 2013 by admin

Install Readme for DaoSTORM (which files do we need to copy) compiled binaries for 64-bit windows installation and filepath setup for MinGW-64bit See if Homotopy Install guide works.  If so similar approach should also get DaoSTORM running. New molecule list … Continue reading →

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Friday 01/25/13

Posted on January 25, 2013 by admin

(out sick.  Trying to work a little form home) STORM stop O/N STORM run of BX-C-cy5 / H3K27-488 Call Bender busy signal, try later (2x) ovoD line on chr2 not extant in Bender stocks Available alleles Psc h27, II, 48, … Continue reading →

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Thursday 01/24/13

Posted on January 24, 2013 by admin

9:30 A – 7:30P STORM * Finish O/N run by 10A. * Run Z-calibration * Copy and delete data!  Remove external hard-drive * Image BX-C + H3K27me3-488 slide (at 4C in PBT).  maybe we should store these in 2x SSCT? … Continue reading →

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Wednesday 01/23/13

Posted on January 23, 2013 by admin

10:30 A – 8:30P, 9:30P – 11:45P (8:45-10:30A workout) Fly Work collect virgins: Df/CyO,esc[2],  2x mat-tub Gal4. collect males: esc[6]/Sp. cross (1 new bottle) esc[6]/Sp x Df/CyO,esc[2] (should have used Gla, will need to screen Sp for all flies that … Continue reading →

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Sunday 01/20/13

Posted on January 20, 2013 by admin

11:00 A – 4:00P, 10:00P-12:00A Coding Frame-by-frame analysis now runs in a platform independent way form the new shared project matlab-storm folder for both DaoSTORM and InsightM Writing new Analysis script (RunDotFinder) — modified, more flexible version of Run_Insight that … Continue reading →

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Saturday 01/19/13

Posted on January 19, 2013 by admin

11:00 A – 7:00 P Snail Rewrite fxn_Figs_y_v_snail to render only figures indicated in list Plotnames and show them in the indicated figure: ff = strfind(Plotnames,’box_CoVratio’); ff = find(1 – cellfun(@isempty, ff)); if ~isempty(ff) figure(Plotnumbers(ff)); clf; … end This facilitates … Continue reading →

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Code meeting

Posted on January 19, 2013 by admin

Organization Functions ‘Clean code’ * has help file — lists all inputs and outputs with descriptors functions have small number of mandatory inputs (typically 1-4) additional inputs are passed as ‘Flag’,value pairs.  (see examples) long code is written in demarcated code blocks … Continue reading →

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Friday 01/18/13

Posted on January 18, 2013 by admin

10:40A – 8:00P, 10:ooP – 12:15 A (9-10:40 workout session with group) Coding fixed bug in new temp parameter structure. Added autoload functions uiopen in Matlab default launch folder.  The daxviewer STORMfinder is launched when a dax file is loaded. … Continue reading →

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Thursday 01/17/13

Posted on January 17, 2013 by admin

10:30 A – 7:00P, 8:30P – 9:30P (8:30 – 10:30 workout session) Probe making combine, precipitate and pellet en-647 oligoPAINT probe # Wash, combine, and resupend probe-pellet, # Prep for digestion reaction Cell culture (500 kbp probe test 2) After … Continue reading →

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