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Tag Archives: mRNA counting
Monday 06/27/11
10:00 A — 6:45 P, 7:30P – 9:20 P Discussion with Mounia and Jacques from Gordon Conference Discussion with ML from Gordon Conference observations. Set up priorities. Progress Report. Errors in data analysis for Espl, vnd double null embryo analysis. … Continue reading
Protected: snail y Hz quantification
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Posted in Shadow Enhancers
Tagged controls, mRNA counting, shadow enhancers, sna
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Progress Report 06/27/11
Progress Report Top Findings: 1. Effect of bcd does on hb expression: 6x bcd have peak hb levels similar to 2x bcd, 1x bcd are close but a little less hb and more variable between embryos. 2. hb-BAC minus shadow … Continue reading
Posted in Research Planning
Tagged bcd, hb, imaging, mRNA counting, Progress Report, shadow enhancers, sna
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Protected: MP09 intensity sensitivity
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Posted in AP patterning, Microscopy, Shadow Enhancers
Tagged bcd, controls, hb, mRNA counting, shadow enhancers
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Wednesday 06/22/11
9:40 A -3:30 p Finish ON confocal. Data acquisition looks good, 10 embryos finished. Rerunning unsupervised dot counting with higher threshold to reduce noise in y channel on MP09_c. (matched .05 filter rather than .02). Layout for lab-meeting.
Posted in Summaries
Tagged confocal, mRNA counting, presentations
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Protected: bcd 1x v 6x cont
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Posted in AP patterning
Tagged analysis, bcd, hb, mRNA counting
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Protected: bcd 1x and 6x counting
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Posted in Transcription Modeling
Tagged bcd, hb, mRNA counting
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Monday 06/20/11
10:00 A — 7:00P, 8:00P – 10:00P Mount slides Confocal, MP07 hets Test samples (s02, some background, weak en in test sample, need more imaging) Biophysics webpage development: added academics page and random image widget. Analyzing sna[18] MP10 data Reading … Continue reading
Sunday 06/19/11
3:45P – 7:20P, 8:10 P — in situs day 3 used old block on samples, then rinsed and switched to new block — don’t store diluted sample. Fixed page specific posts for biophysics page using widget logic (widget context doesn’t … Continue reading
Protected: Analyze snail shadow deletion counts
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Posted in Shadow Enhancers
Tagged analysis, mRNA counting, shadow enhancers
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