Monthly Archives: March 2014

Protected: project 2 update and planning

Posted on March 25, 2014 by admin

There is no excerpt because this is a protected post.

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Monday 03/24/14

Posted on March 24, 2014 by admin

10:00a – 11:15p Chromatin Project Data summaries making slides to summarize recent analysis of multi-color data see slides for 3/28/14 XZ meeting Data analysis F03-F04 data chromewarps obviously don’t match data, clear multi-pixel shift up and to the right on … Continue reading →

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Protected: project 2 update 03/24/14

Posted on March 24, 2014 by admin

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buffer tests 04/23/14

Posted on March 23, 2014 by admin

1% BME 10 mM MEA 0.5% BME + COT 2% BME + COT 10 mM MEA + COT 50 mM MEA +COT 50 mM MEA + SSC + COT

Posted in General STORM | Comments Off on buffer tests 04/23/14

git remove binary files

Posted on March 21, 2014 by admin

See current file size. First need to git gc Alistair@MONET ~/Documents/Research/Projects/Chromatin/Code (master) $ git gc Counting objects: 713, done. Delta compression using up to 8 threads. Compressing objects: 100% (570/570), done. Writing objects: 100% (713/713), done. Total 713 (delta 257), … Continue reading →

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Friday 03/21/14

Posted on March 21, 2014 by admin

10:30a PH project results at greater sampling depth, longer simulation time, for the current published table parameters see PH project version corresponding to current date for details. Data\2014-03-17_PhSim\PhCell_CappingModel5.mat Research Organization Reorganizing projects folder Freezer space organization started new box: Lib3 … Continue reading →

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Thursday 03/20/14

Posted on March 20, 2014 by admin

10:15a – 12:15a Project 2 see protected notes Chromatin Project Probe Making RTs 4 uL primer gel looks good, basically complete incorporation. Maybe try 8 uL primer next time? (going to need to order more primer!) probes in 4C walkin, … Continue reading →

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Physicists of Biology hangout 03/20/14

Posted on March 20, 2014 by admin

Pallav Kosuri (Zhuang Lab) Intro passive elacticity — stored energy in (in-elastic) muscle. contrast running to yoga. muscle structure z-bands spanned by titin. Titin stretches elastically. Atomic Force Microscope and Titin Force clamp setup: fixed force (through feedback, measure force … Continue reading →

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Protected: Project 2 controls 10/20/14

Posted on March 20, 2014 by admin

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Wednesday 03/19/14

Posted on March 19, 2014 by admin

10:20a – 11:30p PH project Simulations / model description Improved behavior from PH simulation \Data\2014-03-17_PhSim\PhCell_CappingModel4 Main Figures wrote new scripts to graph the data in figures 1-3 quickly. Useful for changing binning intervals, fonts / colors / sizes etc easily. … Continue reading →

Posted in Summaries | Comments Off on Wednesday 03/19/14