September 2025 M T W T F S S « Aug 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 Categories
- AP patterning (13)
- Blog (1)
- Chromatin (88)
- Conference Notes (72)
- Fly Work (54)
- General STORM (25)
- Genomics (134)
- Journal Club (22)
- Lab Meeting (66)
- Microscopy (79)
- Notes (1)
- probe and plasmid building (58)
- Project Meeting (3)
- Protocols (13)
- Research Planning (74)
- Seminars (21)
- Shadow Enhancers (59)
- snail patterning (40)
- Software Development (5)
- Summaries (1,412)
- Teaching (9)
- Transcription Modeling (40)
- Uncategorized (10)
- Web development (19)
Links
Tags
analysis cell culture cell labeling chromatin cloning coding communication confocal data analysis embryo collection embryo labeling figures fly work genomics hb image analysis image processing images in situs Library2 literature making antibodies matlab-storm meetings modeling MP12 mRNA counting Ph planning presentation probe making project 2 project2 result results sectioning section staining shadow enhancers sna snail staining STORM STORM analysis troubleshooting writing-
GitHub Projects
Author Archives: admin
Protected: Project 2, new analysis functions
There is no excerpt because this is a protected post.
Posted in Genomics
Comments Off on Protected: Project 2, new analysis functions
Oliver Rando: I: Structural biology of the yeast genome II: Mechanical disassembly and reassembly of mammalian reproduction
MNase digestion — nucleosome phasing 26 different histone modifications mapped genome wide. in 20kb of yeast chrIII chromosome conformation capture mapping 300 nm the 30 nm fiber mode solenoid model, regular 30 nm model zigzag, 3 nucleosomes / turn, less … Continue reading
Posted in Seminars
Comments Off on Oliver Rando: I: Structural biology of the yeast genome II: Mechanical disassembly and reassembly of mammalian reproduction
Monday 04/14/14
9:45a – 9:00p Computer issues Attempted to swap memory into Cajal. Cajal won’t boot up with any of the memory restored Tuck to 6x 8GB DIMMS. Cajal has 12x 4GB DIMMS wrote to IT to help get system back up. … Continue reading
Saturday 04/12/14
9:30a – 4:00p Computer Management attempting to give users rights to share their hard-drives on the network without having full Admin capabilities to do anything they want. Tried adding my ‘User’ account to these groups “Performance Monitor Users” — can … Continue reading
Friday 04/11/14
9:30a – 10:00p Goals Need to finish review Need to make slides for symposium at Penn send revised Troubleshooting sudden failure in staining Troubleshooting staining Background of problem: Stained new cells on Saturday, went to image these on Monday — … Continue reading
Additional Windows Server 2012 notes
On Windows Server 2012, domain users are not allowed to log on locally by default. To edit this, follow these directions. Add Domain Users. Can also edit other permission logs per user here.
Posted in Web development
Tagged Cajal, Windows 2012
Comments Off on Additional Windows Server 2012 notes
Thursday 04/10/14
10:15a – 11:00p Presentation Prep XZ wants to meet at 3P, need to make slides (for project 2) see more project 2 protected notes. Troubleshooting stains sample E03 (previously stained beautifully) failed to work on new cells. Not a simple … Continue reading
Posted in Summaries
Comments Off on Thursday 04/10/14
Wednesday 04/09/14
9:30a – 8:30p Chromatin labeling stains failed again. No stains yet detected with this batch of cells. maybe it’s a cell prep issue? This F07 probe worked fine before. maybe some reagents went bad in the cell prep? Make new … Continue reading
Tuesday 04/08/14
9:30a – 11:00p Goals reschedule Dentist try 2, Cajal windows upgrade Need to finish review / referee paper Set up STORM imaging of E3 Test new hybes Finish writeup #2 draft for XZ. sent back to team for comments Start … Continue reading
Monday 04/07/14
9:30a – 11:30p Meetings lab meeting (see protected notes) my journal club presentation (see google-docs presentation) initial planning meeting with Steven — need joint write-up, goal to write by Wed Writing finalizing write-up 1 for XZ with Jeff. working on … Continue reading