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Tag Archives: images
issues with computing photon counts by exponential distributions
Fitting exponential distributions to molecule areas output from insight, multiplied by photon per count for gain 30 on STORM2 (.41 photons). These data are all from Hazen’s 2D microtubules. My 3D microtubules, Yari’s 2D sections, my 2D … Continue reading
Posted in Microscopy
Tagged images, troubleshooting
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Friday 07/06/12
10:10 A – 7:30P, 9:00P -11:15P Flip fly cages, 10:10A Revisions of dynamics paper, revised, updated to v7. compare to NM requirements. Version and comparison sent back to ML. May need to combine figures and prune text. Take embryos out … Continue reading
Posted in Summaries
Tagged coding, embryo collection, images, sectioning, writing
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Protected: snail dose effects
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Posted in snail patterning
Tagged figures, images, snail
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Tuesday 05/08/12
10:00A – 10:50 P Bcd Gal4 x shRNA Pc2 and x Psc shRNA1 both still hatch larvae. Flip collection cages check mail for Perrimon Gal4 3x line – not yet arrived rerunning Pc-GFP controls with Colenso’s parameters (min height 750 … Continue reading
Posted in probe and plasmid building, Summaries
Tagged coding, images, probe making, STORM analysis
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Friday 05/04/12
12:00 P – 9:30 P 8:30-12P volleyball practice update probe & plasmid library update antibody labels collect virgins set up shRNA crosses x Pc shRNA2 and Psc shRNA 1 in collection cages PCR for in vitro transcription rxn to make … Continue reading
Wednesday 04/25/12
9:45 A – 8:30 P O/N hybridization — should do in PCR block. Water evaporates from 37C block, not good contact with PCR tube. Refilled water, allow another hour of hybrdization before washes. Sequencing results: A1 = Taf1 antisense (sequence with m13F … Continue reading
Posted in probe and plasmid building, Summaries
Tagged embryo labeling, images, probe making
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Protected: DNA-Oligo STORM try 1
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Sunday 03/18/12
11:00 A – 8:45 P No colonies on plates Finish O/N STORM run. Run failed at movie 121, unknown error message. attempt bead feducial drift correction: polysterene beads good autofluoresnce in all but 750, but bleach fast. 405 beads not … Continue reading
Posted in Summaries
Tagged cloning, confocal, embryo collection, embryo labeling, fly work, images, STORM
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