September 2025 M T W T F S S « Aug 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 Categories
- AP patterning (13)
- Blog (1)
- Chromatin (88)
- Conference Notes (72)
- Fly Work (54)
- General STORM (25)
- Genomics (134)
- Journal Club (22)
- Lab Meeting (66)
- Microscopy (79)
- Notes (1)
- probe and plasmid building (58)
- Project Meeting (3)
- Protocols (13)
- Research Planning (74)
- Seminars (21)
- Shadow Enhancers (59)
- snail patterning (40)
- Software Development (5)
- Summaries (1,412)
- Teaching (9)
- Transcription Modeling (40)
- Uncategorized (10)
- Web development (19)
Links
Tags
analysis cell culture cell labeling chromatin cloning coding communication confocal data analysis embryo collection embryo labeling figures fly work genomics hb image analysis image processing images in situs Library2 literature making antibodies matlab-storm meetings modeling MP12 mRNA counting Ph planning presentation probe making project 2 project2 result results sectioning section staining shadow enhancers sna snail staining STORM STORM analysis troubleshooting writing-
GitHub Projects
Tag Archives: confocal
Friday 12-16-11
10:00A – 6:00P, 8:00P – 9:30P successful 3D pan-histone nuclear reconstructions bcd, ftz, H3 in situs post primary reaction, day 2. incubating in primary antibody 2nd round with in situ primaries added to solution O/N at 4C. new in situs … Continue reading
Sunday 07/24/11
12:50P-1:30P Break down ON confocal of MP07Hz.
Saturday 07/23/11
5:00P – 6:30P, 8:00P-9:00P Setup and run confocal of MP07Hz snaD embryos
Thursday 07/21/11
8:15 A – 4:50 P Finish ON confocal sna2.8 30C hets Start confocal twiN vnd, sna. vnd is expressed in twi null twiN sim, sna imaging. sim is expressed in twi nulls Working on plotting rescue data with new added … Continue reading
Wednesday 07/20/11
9:00 A – 3:45 P, 8:00P – 9:50P, 10:50P – 11:45P Finish ON confocal of MP08Hz_snaD_b rescues ON dotfinding of MP12Hz_snaD was computed on single channel only. Need to repeat. Write to Banff participants about carpool (Mary, Gregor, Narendra, Brian). Need … Continue reading
Posted in Summaries
Tagged confocal, fellowships, MP06, MP08, MP12, mRNA counting, sna, sna2.8
Comments Off on Wednesday 07/20/11
Tuesday 07/19/2011
8:30 A – 7:00P, 9:00P – 10:40P Finish ON confocal MP12Hz with sna/sim Start new confocal fun MP06 channel-flip Update probe database: ANB_Probes.xls (excel 95 format for Mac-Matlab excel import to work). Match all existing probes and probe templates. Update … Continue reading
Monday 07/18/11
8:20A Projecting 2.8het sna sim counting data Analyzing 2.8het sna sim data Projecting MP12 Hz data Analyzing MP12 Hz data Confocal MP05Hz repeat (start warmup 2:15). Finish flipping stocks except APT eye screening 3 new bottles of AP-toll Lab meeting … Continue reading
Sunday 07/17/11
3:ooP Finish ON confocal, vertical drift lost most of stack of MP06 Hz embryos :(.
Saturday 07/16/11
7:00 P — 10:00P Setup ON confocal, MP05Hz (from 6/20) offset 8.5 um, warmup 1.25 hrs, still drifted. Maybe too long refinding embryo planes and running sample scans. use more aggressive vertical offset (5 or 6).
Monday 07/11/11
8:00 A –9:30P Prep for lab meeting lab meeting presentation on hb mRNA counting data (with some sna data update) MP06b data analysis: imviewer, im_nucseg, and launch dot counting