April 2024 M T W T F S S « Aug 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 Categories
- AP patterning (13)
- Blog (1)
- Chromatin (88)
- Conference Notes (72)
- Fly Work (54)
- General STORM (25)
- Genomics (134)
- Journal Club (22)
- Lab Meeting (66)
- Microscopy (79)
- Notes (1)
- probe and plasmid building (58)
- Project Meeting (3)
- Protocols (13)
- Research Planning (74)
- Seminars (21)
- Shadow Enhancers (59)
- snail patterning (40)
- Software Development (5)
- Summaries (1,412)
- Teaching (9)
- Transcription Modeling (40)
- Uncategorized (10)
- Web development (19)
Links
Tags
analysis cell culture cell labeling chromatin cloning coding communication confocal data analysis embryo collection embryo labeling figures fly work genomics hb image analysis image processing images in situs Library2 literature making antibodies matlab-storm meetings modeling MP12 mRNA counting Ph planning presentation probe making project 2 project2 result results sectioning section staining shadow enhancers sna snail staining STORM STORM analysis troubleshooting writing-
GitHub Projects
Tag Archives: in situs
Thursday 02/16/2012
9:40 A — 12:10 A collect virgins O/N STORM run did not finish on schedule (68 of 112 images done) contact Wu lab about choice DNA FISH regions install GTX580 card. install latest NVIDIA drivers received Rad21 antibodies in 50% … Continue reading
Wednesday 02/15/12
9:45 A — 11:00P Etching Dm0-1 slides (25-30 min) for STORM. (Slide 69 in records) Flip fly cage, 10A Washing out primary antibody in PcG stained embryos in situs for PcG stained embryos: hox and en locus (see records) organized … Continue reading
Saturday 01/21/12
8:45 A — 2:00 P in situs moved through resin, dense collection of embryos 10 embedding capsules of embryos made for each of the 4 in situ tubes (+4 of tube 1 by KE for practice). in situ embryos baking … Continue reading
Tuesday 01-17-12
9:30A – 7:00 P in situs day 1 + training KE Flip Fly cages 10:45 A Flip collection cages: 12:45 P 3:45PM fix embryos (2-5hr MP08 collection) working on figure for fellowship app
Saturday 12-17-11
12:00P – 1:00 P, 8:45P – 10:20 P O/N confocal only finished 12 embryos between 8p and noon, extended run to finish remaining 4 selected on slide. mount all MP08. mount subsets of embryos: eng-dig, eng-fl, antp+ubx, AbdA+ubx. remaining embryos … Continue reading
Friday 12-16-11
10:00A – 6:00P, 8:00P – 9:30P successful 3D pan-histone nuclear reconstructions bcd, ftz, H3 in situs post primary reaction, day 2. incubating in primary antibody 2nd round with in situ primaries added to solution O/N at 4C. new in situs … Continue reading
Thursday 12-15-11
7:45 A – 8:30 P stopped O/N confocal run, only finished 6 embryos (11P recording start until 7:45A stop). hot washes for in situs (engrailed, ubx, antp, and MP08) split bcd, ftz, H3K4 embryos, start in situs with half of … Continue reading
Posted in Summaries
Tagged image processing, in situs, protein, sectioning
Comments Off on Thursday 12-15-11
Sunday 06/19/11
3:45P – 7:20P, 8:10 P — in situs day 3 used old block on samples, then rinsed and switched to new block — don’t store diluted sample. Fixed page specific posts for biophysics page using widget logic (widget context doesn’t … Continue reading
Saturday 06/18/11
2:30P – 7:00 P, 8:00P – 10:30 P in situs day 2 Analyze s07_MP08Hz data Finish confocal MP09Hz_c write response for Stas to stats paper
Friday 06/17/11
10:00 A — 7:40P, 8:10P — 10:00P Send response letters to PIs Plan out next round of in situs in situs day 1 renamed Enhancer_modeling project to mRNA_counting as more appropriate description. Fixed most-all links in m-code. Still need to … Continue reading