Tag Archives: Ph

Protected: Ph project update

Posted on January 8, 2014 by admin

There is no excerpt because this is a protected post.

Posted in Chromatin | Tagged | Comments Off on Protected: Ph project update

Tuesday 01/07/14

Posted on January 7, 2014 by admin

10:00a – 10:15p chromatin data collection Finish O/N STORM on F04. Transfer data from F03 and F04 to Monet start analysis of F03 and F04 data wash out stains for new BX-C regions: F05, G04 (ANTC), F03-F04-F05 combo, F05-A647 F06-A750. … Continue reading →

Posted in Summaries | Tagged , , , , | Comments Off on Tuesday 01/07/14

Thursday 01/02/2014

Posted on January 2, 2014 by admin

9:30a – 9:00p Ph project Finish O/N STORM run Take IR bead images (slide is also getting clumpy. Maybe we need to stick these down with EDAC. I think making slides for long term storage with Glox is also a … Continue reading →

Posted in Summaries | Tagged , | Comments Off on Thursday 01/02/2014

Wednesday, 01/01/2014

Posted on January 1, 2014 by admin

1:30p – 9:10p, remotely, 12:30a – 1:15a Goals more Ph imaging Wt New Year’s letter website updates Troubleshooting drift correction curves. start working on dual-color ChromatinCropper STORM for Ph project The buffer has all gone, because I ran the thing … Continue reading →

Posted in Summaries | Tagged , , | Comments Off on Wednesday, 01/01/2014

Tuesday 12/31/13

Posted on December 31, 2013 by admin

9:00a – 5:00p Goals set up STORM imaging for PhWtPh. improved drift correction write quick script to average bead dax movies (and split them out?). Test on the G1-G1 0004 data? modify feducialDriftCorrection function to be able to handle time … Continue reading →

Posted in Summaries | Tagged , | Comments Off on Tuesday 12/31/13

Saturday 12/28/13

Posted on December 28, 2013 by admin

9:30a – 1:45a Library 3 Design / probe building Results from first attempt at probe assembly oligoArrayCommand was getting rewritten in the loop, need a temp parameter to preserve the genename flag to be used for substitution consequently probe building … Continue reading →

Posted in Summaries | Tagged , , , | Comments Off on Saturday 12/28/13

Thursday 12/12/13

Posted on December 12, 2013 by admin

10:45a – 11:00p Ph Simulations Troubleshooting extra along bonds. Oops, actually just resulted from plotting the wrong attachment matrix for the given position list. Simulations ran at subsaturating Ph — more total sites than available Ph. Hence there is a … Continue reading →

Posted in Summaries | Tagged , , , | Comments Off on Thursday 12/12/13

Wednesday 11/27/13

Posted on November 27, 2013 by admin

Goals Sequencing analysis plots of coverage uniformity per probe set plots of failed probe vs. purity using new indexed method (or maybe just a length cut-off) Ph Project restart simulations Genomics start building library 4 (on Monet) start building library … Continue reading →

Posted in Summaries | Tagged , | Comments Off on Wednesday 11/27/13

Tuesday 11/19/13

Posted on November 19, 2013 by admin

9:15a – 1:00a Goals Slides for meeting with Levine Chromatin STORM analysis Analyze D11 region cells should arrive today — start in culture Library 3 design Library 3 observation: short green regions (<50 kb, basically everything not near a centromere/telomere) … Continue reading →

Posted in Summaries | Tagged , , , | Comments Off on Tuesday 11/19/13

Wednesday 11/13/2013

Posted on November 13, 2013 by admin

10:00a – 7:15p Other Reply to BJ with final corrections / proofs Deep sequencing analysis scatterplot correlations on log10 scale Coding Interesting matlab fact: Nested functions have access to the parent workspace. Got CIGAR and MD parser from Jeff to … Continue reading →

Posted in Summaries | Tagged , | Comments Off on Wednesday 11/13/2013